Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WA016_RS10510 Genome accession   NZ_CP147913
Coordinates   2749411..2750499 (-) Length   362 a.a.
NCBI ID   WP_338869807.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain KYC2006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2744411..2755499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WA016_RS10500 (WA016_02126) - 2746334..2746867 (-) 534 WP_338869803.1 GNAT family protein -
  WA016_RS10505 (WA016_02127) - 2747008..2749161 (-) 2154 WP_338869805.1 alkaline phosphatase D family protein -
  WA016_RS10510 (WA016_02128) recA 2749411..2750499 (-) 1089 WP_338869807.1 recombinase RecA Machinery gene
  WA016_RS10515 (WA016_02129) - 2750613..2751386 (-) 774 WP_338869809.1 hypothetical protein -
  WA016_RS10520 (WA016_02130) glmS 2751553..2753388 (-) 1836 WP_338869811.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  WA016_RS10525 (WA016_02131) glmU 2753499..2754908 (-) 1410 WP_338873618.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38892.60 Da        Isoelectric Point: 6.8708

>NTDB_id=949669 WA016_RS10510 WP_338869807.1 2749411..2750499(-) (recA) [Myxococcus stipitatus strain KYC2006]
MAVNQEKEKAIELAMSAVERQFGKGSIMRLGNDEPLMRDVQAISTGSISLDIALGVGGVPKGRIIEIFGPESSGKTTLCL
HIVAEAQKRGGICGYVDAEHALDVGYARKLGVRTDDLLLSQPDTGEQALEIAEMLVRSGAIDVLVVDSVAALVPKAELEG
EMGDAHMGVQARLMSQALRKLTGTIAKSQTCVIFINQIRMKIGVMFGNPETTTGGNALKFYASQRLDIRRIGAIKNGENV
VGSRTRVKVVKNKVAPPFKEVEFDIMYGTGISREGDLIDLASNDNIVEKSGSWFSFNGERIGQGRENAKDYLKEHPEVSR
AIEAQVLEKYGITKGAAAPAPAAEEAPAEGASEKRQRVKAVK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=949669 WA016_RS10510 WP_338869807.1 2749411..2750499(-) (recA) [Myxococcus stipitatus strain KYC2006]
ATGGCCGTGAATCAAGAGAAGGAAAAGGCGATCGAGCTGGCGATGTCCGCGGTGGAGCGCCAGTTCGGTAAGGGTTCGAT
CATGCGGCTCGGCAACGACGAGCCGCTGATGCGCGACGTGCAGGCCATTTCGACGGGCTCGATTTCCTTGGACATCGCCC
TGGGCGTGGGCGGTGTTCCCAAGGGCCGAATCATCGAGATTTTCGGACCGGAATCCTCCGGCAAGACGACGCTGTGTCTC
CACATCGTGGCCGAGGCGCAGAAGCGCGGTGGCATCTGCGGCTACGTGGACGCCGAGCACGCGCTGGACGTGGGCTACGC
GCGCAAGCTGGGCGTGCGCACCGACGACCTGCTCCTGAGCCAGCCGGACACCGGTGAGCAGGCGCTCGAAATCGCGGAGA
TGCTCGTTCGCTCCGGCGCCATCGACGTGCTGGTGGTCGACTCCGTGGCCGCCCTCGTTCCCAAGGCGGAACTCGAGGGT
GAGATGGGCGATGCGCACATGGGCGTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGCAAGCTCACGGGCACCATCGCCAA
GAGCCAGACGTGCGTCATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACCACGG
GCGGCAACGCGCTGAAGTTCTACGCGTCCCAGCGCCTGGACATCCGCCGCATCGGCGCCATCAAGAACGGCGAGAACGTG
GTGGGCAGCCGCACGCGCGTGAAGGTGGTGAAGAACAAGGTCGCGCCTCCGTTCAAGGAGGTCGAGTTCGACATCATGTA
CGGCACGGGCATCTCGCGTGAGGGAGACCTCATCGACCTGGCCTCGAACGACAACATCGTGGAGAAGAGCGGCAGCTGGT
TCTCCTTCAACGGTGAGCGCATCGGCCAGGGCCGGGAGAACGCCAAGGACTACCTCAAGGAGCACCCGGAGGTGTCGCGG
GCCATCGAGGCCCAGGTGCTGGAGAAGTACGGCATCACCAAGGGCGCTGCCGCGCCGGCCCCCGCCGCGGAAGAGGCCCC
CGCCGAGGGCGCCAGCGAGAAGCGCCAGCGCGTGAAGGCCGTGAAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.389

90.884

0.622
  recA Pseudomonas stutzeri DSM 10701

63.557

94.751

0.602
  recA Acinetobacter baylyi ADP1

62.824

95.856

0.602
  recA Vibrio cholerae strain A1552

66.258

90.055

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.258

90.055

0.597
  recA Acinetobacter baumannii D1279779

62.319

95.304

0.594
  recA Neisseria gonorrhoeae MS11

65.432

89.503

0.586
  recA Neisseria gonorrhoeae MS11

65.432

89.503

0.586
  recA Neisseria gonorrhoeae strain FA1090

65.432

89.503

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

62.059

93.923

0.583
  recA Glaesserella parasuis strain SC1401

64.907

88.95

0.577
  recA Helicobacter pylori strain NCTC11637

62.651

91.713

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

91.436

0.569
  recA Helicobacter pylori 26695

62.048

91.713

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.691

90.331

0.566
  recA Streptococcus pneumoniae TIGR4

61.377

92.265

0.566
  recA Streptococcus pneumoniae Rx1

61.377

92.265

0.566
  recA Streptococcus pneumoniae D39

61.377

92.265

0.566
  recA Streptococcus pneumoniae R6

61.377

92.265

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.963

89.503

0.564
  recA Streptococcus mitis SK321

59.302

95.028

0.564
  recA Streptococcus mitis NCTC 12261

58.841

95.304

0.561
  recA Streptococcus pyogenes NZ131

60.303

91.16

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

91.713

0.544
  recA Streptococcus mutans UA159

58.61

91.436

0.536
  recA Lactococcus lactis subsp. cremoris KW2

58.308

91.436

0.533