Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WA016_RS10225 Genome accession   NZ_CP147913
Coordinates   2674269..2675297 (+) Length   342 a.a.
NCBI ID   WP_338869695.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain KYC2006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2669269..2680297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WA016_RS10205 (WA016_02065) - 2669503..2670126 (+) 624 WP_338869689.1 DUF2378 family protein -
  WA016_RS10210 (WA016_02066) - 2670027..2670668 (-) 642 WP_338869691.1 hypothetical protein -
  WA016_RS10215 (WA016_02067) - 2670890..2672437 (+) 1548 Protein_2005 YifB family Mg chelatase-like AAA ATPase -
  WA016_RS10220 (WA016_02068) - 2672533..2673894 (-) 1362 WP_338869693.1 NAD(P)/FAD-dependent oxidoreductase -
  WA016_RS10225 (WA016_02069) recA 2674269..2675297 (+) 1029 WP_338869695.1 recombinase RecA Machinery gene
  WA016_RS10230 (WA016_02070) - 2675298..2675807 (-) 510 WP_338869697.1 DUF1285 domain-containing protein -
  WA016_RS10235 (WA016_02071) - 2675866..2677308 (-) 1443 WP_338869699.1 hypothetical protein -
  WA016_RS10240 (WA016_02072) - 2677305..2678567 (-) 1263 WP_338869701.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  WA016_RS10245 (WA016_02073) pssA 2678730..2679587 (-) 858 WP_338869702.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36084.40 Da        Isoelectric Point: 7.4365

>NTDB_id=949668 WA016_RS10225 WP_338869695.1 2674269..2675297(+) (recA) [Myxococcus stipitatus strain KYC2006]
MSKLTEKLKAVAAAVASIEKQFGRGSVMTLGGDAREQKVAVIPSGSVGLDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDLSYARKLGVKVEELLVSQPDTGEQALEITEQLVRSGAVDLIIVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIVFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRTGNLKDGDTVV
GSRARVKVVKNKVAPPFQEAEFDLLYGSGIHRVGEVIDLGVAAGLIDKSGSHFSLRGERIGQGRERAIEWLREHPDTTEA
LARELAGAPPLPCPTAPVEAAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=949668 WA016_RS10225 WP_338869695.1 2674269..2675297(+) (recA) [Myxococcus stipitatus strain KYC2006]
ATGAGCAAGTTGACGGAGAAGTTGAAGGCAGTGGCTGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGGAGGGGCTCGGT
GATGACGCTGGGCGGTGATGCGCGCGAGCAGAAGGTCGCGGTGATTCCCTCAGGTTCGGTGGGATTGGACCGGGCGCTTG
GCGTGGGAGGCTATCCTCGAGGTCGCGTGGTGGAAGTGTTCGGCAATGAGTCTTCGGGCAAGACGACCCTCACCCTGCAT
GCGATTGCCCAGGTGCAAGCAGCCGGTGGAGTGGCGGCCTTCATCGACGCGGAACACGCGCTCGACCTTTCCTATGCGCG
CAAGCTGGGCGTGAAGGTGGAGGAGCTCCTGGTGTCCCAGCCCGACACGGGAGAACAGGCGCTGGAAATCACGGAGCAGC
TCGTTCGCTCCGGAGCGGTGGACCTCATCATCGTGGACTCGGTGGCGGCGCTGGTGCCTCGCGCGGAAATCGAGGGCGAG
ATGGGTGACGCGCACATGGGTGTTCAGGCCCGGTTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCGCGGTGAGCCGCTC
GGGAACCTGCATCGTCTTCATCAACCAGATTCGCATGAAGATTGGGGTGATGTTCGGCAACCCGGAGACCACCACGGGAG
GCAACGCGCTGAAGTTCTACGCCTCGGTGCGCATGGAGATTCGCCGCACGGGGAACCTCAAGGACGGCGACACCGTGGTG
GGCTCTCGAGCCCGCGTGAAGGTGGTGAAGAACAAGGTCGCTCCGCCGTTCCAGGAAGCCGAGTTCGACTTGTTGTACGG
CTCCGGCATTCATCGCGTGGGCGAGGTCATCGACCTGGGCGTGGCCGCGGGGCTCATCGACAAATCGGGCAGTCACTTCA
GTCTGCGAGGTGAACGCATCGGCCAGGGACGCGAACGCGCCATCGAGTGGCTGCGAGAGCATCCCGACACGACGGAAGCC
CTGGCTCGGGAGCTGGCGGGTGCACCGCCGCTCCCCTGCCCCACCGCCCCCGTGGAAGCCGCGGCATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

68.831

90.058

0.62
  recA Neisseria gonorrhoeae MS11

64.923

95.029

0.617
  recA Neisseria gonorrhoeae MS11

64.923

95.029

0.617
  recA Neisseria gonorrhoeae strain FA1090

64.923

95.029

0.617
  recA Pseudomonas stutzeri DSM 10701

65.312

93.567

0.611
  recA Acinetobacter baylyi ADP1

63.551

93.86

0.596
  recA Glaesserella parasuis strain SC1401

63.438

93.567

0.594
  recA Vibrio cholerae strain A1552

63.636

93.275

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.636

93.275

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.898

91.52

0.585
  recA Acinetobacter baumannii D1279779

62.382

93.275

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

57.941

99.415

0.576
  recA Helicobacter pylori strain NCTC11637

56.686

100

0.57
  recA Helicobacter pylori 26695

56.686

100

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.436

93.86

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.063

92.982

0.558
  recA Lactococcus lactis subsp. cremoris KW2

55.758

96.491

0.538
  recA Streptococcus pneumoniae D39

56.79

94.737

0.538
  recA Streptococcus pyogenes NZ131

56.79

94.737

0.538
  recA Streptococcus pneumoniae Rx1

56.79

94.737

0.538
  recA Streptococcus pneumoniae R6

56.79

94.737

0.538
  recA Streptococcus pneumoniae TIGR4

56.79

94.737

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.729

92.69

0.535
  recA Streptococcus mitis NCTC 12261

55.864

94.737

0.529
  recA Streptococcus mutans UA159

57.46

92.105

0.529
  recA Streptococcus mitis SK321

57.46

92.105

0.529