Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WDS16_RS11095 Genome accession   NZ_CP147846
Coordinates   2384380..2385417 (-) Length   345 a.a.
NCBI ID   WP_338892715.1    Uniprot ID   -
Organism   Rhodococcus sovatensis strain 18930     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2382547..2383767 2384380..2385417 flank 613


Gene organization within MGE regions


Location: 2382547..2385417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDS16_RS11085 (WDS16_11085) - 2382547..2383767 (+) 1221 WP_338886216.1 IS110 family transposase -
  WDS16_RS11090 (WDS16_11090) - 2383806..2384363 (-) 558 WP_338892714.1 regulatory protein RecX -
  WDS16_RS11095 (WDS16_11095) recA 2384380..2385417 (-) 1038 WP_338892715.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37001.29 Da        Isoelectric Point: 5.0385

>NTDB_id=948931 WDS16_RS11095 WP_338892715.1 2384380..2385417(-) (recA) [Rhodococcus sovatensis strain 18930]
MAAYDRDKALDLALAQIDKNFGKGSVMRLGDEVRQPIAVIPTGSIALDVALGIGGLPRGRVIEVYGPESSGKTTVALHAV
ASAQRAGGIAAFIDAEHALDPDYAQKLGVDTDALLVSQPDTGEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKMTGAMSNSGTTVIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDIRRIETLKDGTDAIGN
RTRVKVVKNKVAPPFKQAEFDIIYGKGISREGSLIDMGVEHGFIRKSGSWFTYDGDQLGQGKENARKFMLENPDVRDEIE
KKIMEKLQIGADVTATEDAAAPVEF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=948931 WDS16_RS11095 WP_338892715.1 2384380..2385417(-) (recA) [Rhodococcus sovatensis strain 18930]
ATGGCTGCATACGATCGCGACAAAGCGCTCGATCTCGCACTTGCGCAGATCGACAAGAACTTCGGCAAGGGATCGGTGAT
GCGTCTCGGCGACGAGGTTCGTCAGCCGATTGCTGTCATTCCCACCGGTTCCATTGCGCTGGACGTCGCGCTCGGTATCG
GTGGTTTGCCTCGTGGACGTGTCATCGAGGTCTACGGCCCGGAATCCTCGGGGAAAACGACGGTCGCGCTCCATGCCGTT
GCCAGTGCGCAGCGCGCAGGCGGCATCGCCGCCTTCATCGATGCCGAGCACGCCCTCGACCCCGATTACGCCCAGAAGCT
CGGCGTCGACACCGATGCGCTGCTGGTCTCGCAGCCCGACACCGGTGAGCAGGCGCTGGAAATCGCAGACATGCTCATCC
GCTCGGGGGCCCTCGACATTCTGGTCATCGACTCGGTGGCGGCTCTCGTGCCGCGCGCCGAGATCGAGGGCGAGATGGGT
GACAGTCACGTCGGCCTGCAGGCTCGTCTGATGAGCCAGGCGCTGCGTAAGATGACCGGTGCCATGAGCAACTCCGGCAC
CACGGTGATCTTCATCAACCAGCTGCGTGAAAAGATCGGTGTCATGTTCGGCTCGCCCGAAACAACAACGGGTGGTAAAG
CTCTCAAGTTCTACGCGTCCGTTCGCCTGGATATCCGGCGTATCGAGACGCTCAAGGACGGTACCGACGCTATCGGCAAC
CGCACGCGCGTCAAGGTCGTCAAGAACAAGGTTGCGCCTCCGTTCAAGCAGGCAGAATTCGACATCATCTACGGCAAGGG
CATCAGCCGAGAAGGTTCGTTGATCGACATGGGCGTGGAGCACGGCTTCATCCGAAAGTCAGGTTCCTGGTTCACGTACG
ACGGTGATCAGCTCGGCCAGGGCAAAGAGAACGCCCGTAAGTTCATGCTCGAAAACCCGGATGTACGTGACGAGATCGAA
AAGAAGATCATGGAAAAGTTGCAGATCGGTGCCGACGTGACGGCTACCGAAGACGCGGCCGCACCTGTCGAGTTCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.077

98.261

0.649
  recA Bacillus subtilis subsp. subtilis str. 168

68.224

93.043

0.635
  recA Latilactobacillus sakei subsp. sakei 23K

63.45

99.13

0.629
  recA Acinetobacter baylyi ADP1

64.478

97.101

0.626
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.684

100

0.617
  recA Vibrio cholerae strain A1552

60.684

100

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.687

97.101

0.609
  recA Neisseria gonorrhoeae MS11

65.625

92.754

0.609
  recA Neisseria gonorrhoeae MS11

65.625

92.754

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.625

92.754

0.609
  recA Acinetobacter baumannii D1279779

65.015

93.623

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.03

95.652

0.603
  recA Ralstonia pseudosolanacearum GMI1000

66.134

90.725

0.6
  recA Lactococcus lactis subsp. cremoris KW2

63.158

93.623

0.591
  recA Helicobacter pylori strain NCTC11637

62.963

93.913

0.591
  recA Helicobacter pylori 26695

62.963

93.913

0.591
  recA Glaesserella parasuis strain SC1401

63.354

93.333

0.591
  recA Streptococcus pyogenes NZ131

62.08

94.783

0.588
  recA Streptococcus mutans UA159

62.539

93.623

0.586
  recA Streptococcus mitis NCTC 12261

60.909

95.652

0.583
  recA Streptococcus mitis SK321

60.909

95.652

0.583
  recA Streptococcus pneumoniae TIGR4

61.162

94.783

0.58
  recA Streptococcus pneumoniae Rx1

61.162

94.783

0.58
  recA Streptococcus pneumoniae D39

61.162

94.783

0.58
  recA Streptococcus pneumoniae R6

61.162

94.783

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.967

95.362

0.562