Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DBT37_RS06755 Genome accession   NZ_CP147497
Coordinates   1461082..1462197 (-) Length   371 a.a.
NCBI ID   WP_070559210.1    Uniprot ID   -
Organism   Aerococcus mictus strain UMB0267     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1456082..1467197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBT37_RS06745 (DBT37_0006745) - 1457307..1458941 (-) 1635 WP_111861744.1 G5 domain-containing protein -
  DBT37_RS06750 (DBT37_0006750) rny 1459226..1460797 (-) 1572 WP_064292335.1 ribonuclease Y -
  DBT37_RS06755 (DBT37_0006755) recA 1461082..1462197 (-) 1116 WP_070559210.1 recombinase RecA Machinery gene
  DBT37_RS06760 (DBT37_0006760) - 1462279..1463517 (-) 1239 WP_111861745.1 competence/damage-inducible protein A -
  DBT37_RS06765 (DBT37_0006765) pgsA 1463569..1464147 (-) 579 WP_111861746.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DBT37_RS06770 (DBT37_0006770) - 1464394..1466748 (-) 2355 WP_111861747.1 DNA translocase FtsK -
  DBT37_RS06775 (DBT37_0006775) - 1466902..1467180 (+) 279 WP_070559218.1 acylphosphatase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40092.82 Da        Isoelectric Point: 4.3570

>NTDB_id=946499 DBT37_RS06755 WP_070559210.1 1461082..1462197(-) (recA) [Aerococcus mictus strain UMB0267]
MSTSHDANRQKALDQALKQIEKNFGKGAIMKMGESTDTQVSTVPSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLSGSINKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDI
IGNRTKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGRENAKLYLTENPEIFK
EIDSKVRAEYGFGPAVEDDDSEDETTNEEAKNDSSSDEENETLDLFNDDEE

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=946499 DBT37_RS06755 WP_070559210.1 1461082..1462197(-) (recA) [Aerococcus mictus strain UMB0267]
ATGAGTACATCACATGATGCAAACCGCCAAAAGGCTTTAGACCAGGCCCTTAAACAAATTGAAAAAAACTTCGGCAAGGG
AGCTATAATGAAGATGGGAGAATCGACGGATACTCAGGTGTCGACTGTTCCGTCAGGCTCCTTATCCTTAGATATTGCCC
TAGGAGTCGGAGGTTATCCGCGCGGACGAATTATTGAAGTCTACGGTCCAGAATCTTCCGGGAAAACCACTGTTGCCCTA
CATGCTGTTGCCGAGGTTCAAAAACAAGGTGGTATTGCTGCCTTTATTGATGCTGAGAACGCCTTAGACCCTGAATACGC
TAGAGCTTTGGGGGTTGACATTGATGAGTTATTACTCTCCCAACCGGATACTGGTGAACAAGGGCTAGAAATTGCTGATG
CCTTAGTGTCCTCTGGTGCGATTGATATTGTCGTTGTCGATTCTGTTGCTGCCTTAGTTCCACGGGCTGAAATTGAAGGT
GAGATGGGGGATTCCCATGTGGGGCTCCAAGCCCGGTTGATGTCTCAAGCCCTACGGAAGTTATCAGGGTCCATTAATAA
GACGAAAACCATTGCCATGTTTATTAACCAGATCCGTGAAAAAGTAGGTGTCATGTTTGGTAACCCAGAAACCACCCCAG
GGGGACGGGCCCTAAAATTTTATTCCACTATCCGCCTAGAAGTTAGACGCGGGGAACGGATCAAATCCGGTCAGGATATT
ATTGGTAACCGCACCAAGATTAAAGTAGTAAAAAATAAGGTTGCTCCGCCATTTAAGGTGGCTGAAGTGGATATTATGTA
TGGCCAAGGAATTTCTCAAGCGGGTGAATTAGTTGATTTAGCTGCTGACATGGATATCATTAAGAAGAGTGGCTCTTGGT
ATTCTTACGGGGATGACCGGATTGGCCAAGGACGCGAGAATGCTAAACTATATCTTACCGAAAATCCTGAGATATTTAAG
GAAATTGATAGTAAGGTTCGAGCAGAGTATGGTTTTGGTCCAGCTGTTGAAGATGACGATTCAGAGGATGAAACAACTAA
TGAAGAAGCCAAAAACGATTCATCAAGCGATGAAGAAAATGAAACCCTAGATTTATTTAACGATGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.352

91.914

0.739
  recA Bacillus subtilis subsp. subtilis str. 168

77.607

87.871

0.682
  recA Streptococcus pneumoniae D39

69.061

97.574

0.674
  recA Streptococcus pneumoniae R6

69.061

97.574

0.674
  recA Streptococcus pneumoniae TIGR4

69.061

97.574

0.674
  recA Streptococcus pneumoniae Rx1

69.061

97.574

0.674
  recA Streptococcus mitis NCTC 12261

67.48

99.461

0.671
  recA Streptococcus mitis SK321

67.209

99.461

0.668
  recA Streptococcus mutans UA159

68.144

97.305

0.663
  recA Streptococcus pyogenes NZ131

72.783

88.14

0.642
  recA Lactococcus lactis subsp. cremoris KW2

68.208

93.261

0.636
  recA Neisseria gonorrhoeae strain FA1090

63.743

92.183

0.588
  recA Neisseria gonorrhoeae MS11

63.743

92.183

0.588
  recA Neisseria gonorrhoeae MS11

63.743

92.183

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.152

88.949

0.58
  recA Acinetobacter baylyi ADP1

60.933

92.453

0.563
  recA Acinetobacter baumannii D1279779

61.29

91.914

0.563
  recA Glaesserella parasuis strain SC1401

59.13

92.992

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

89.757

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.043

86.792

0.547
  recA Vibrio cholerae strain A1552

63.043

86.792

0.547
  recA Ralstonia pseudosolanacearum GMI1000

63.175

84.906

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.602

92.183

0.531
  recA Pseudomonas stutzeri DSM 10701

59.568

87.332

0.52
  recA Helicobacter pylori strain NCTC11637

58.41

88.14

0.515
  recA Helicobacter pylori 26695

58.41

88.14

0.515