Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WAX86_RS12405 Genome accession   NZ_CP146970
Coordinates   2740391..2741446 (-) Length   351 a.a.
NCBI ID   WP_138222828.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2735391..2746446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX86_RS12395 (WAX86_12395) alaS 2736072..2738693 (-) 2622 WP_237029723.1 alanine--tRNA ligase -
  WAX86_RS12400 (WAX86_12400) kch 2738970..2740202 (-) 1233 WP_005297823.1 voltage-gated potassium channel protein -
  WAX86_RS12405 (WAX86_12405) recA 2740391..2741446 (-) 1056 WP_138222828.1 recombinase RecA Machinery gene
  WAX86_RS12410 (WAX86_12410) pncC 2741584..2742072 (-) 489 WP_044174512.1 nicotinamide-nucleotide amidase -
  WAX86_RS12415 (WAX86_12415) mutS 2742318..2744888 (+) 2571 WP_376788114.1 DNA mismatch repair protein MutS -
  WAX86_RS12420 (WAX86_12420) rpoS 2745038..2746039 (-) 1002 WP_065170657.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37737.22 Da        Isoelectric Point: 4.8779

>NTDB_id=945212 WAX86_RS12405 WP_138222828.1 2740391..2741446(-) (recA) [Photobacterium damselae subsp. damselae strain WMD-P2]
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETVSTGSLALDIALGAGGLPMGRIVEIFGPESSGKTTLTLETIA
SAQRQGKTCAFIDAEHALDPIYAKKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKDGEEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNRVGELIDLGVKQKLIEKAGAWYSYKGDKIGQGKANAGKFLTENPAIADEIEK
QIRELLLTPPQEETTEDASLDAIEAGEDKAF

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=945212 WAX86_RS12405 WP_138222828.1 2740391..2741446(-) (recA) [Photobacterium damselae subsp. damselae strain WMD-P2]
ATGGACGAGAATAAACAAAAGGCTCTTGCCGCTGCGTTAGGCCAAATTGAGAAGCAGTTCGGTAAAGGCTCTATCATGAA
GCTTGGCGATAACCGTACTATGGATATCGAAACCGTATCAACTGGTTCGTTAGCTCTTGATATCGCATTGGGTGCTGGTG
GTTTACCTATGGGCCGTATCGTTGAGATTTTTGGTCCTGAATCATCAGGTAAAACAACATTAACATTAGAAACCATCGCG
TCAGCTCAGCGCCAAGGTAAAACTTGTGCCTTTATTGATGCCGAGCACGCACTGGATCCTATTTATGCTAAGAAATTAGG
CGTAGATATTGACCAACTTTTGGTTTCTCAGCCAGATACTGGTGAGCAAGCGTTAGAGATTTGTGATGCATTAGCACGCT
CTGGTGCTGTTGACCTTATTGTTGTCGACTCCGTTGCTGCATTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGTGAC
TCACATATGGGTCTGCAAGCTCGTATGCTGTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATTTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAATCCAGAAACAACAACTGGTGGTAATGCAC
TTAAGTTTTACGCTTCTGTTCGTCTTGATATCCGTCGTACAGGTTCAATCAAAGATGGCGAAGAAGTTGTTGGTAATGAA
ACTCGTATTAAAGTGGTGAAGAACAAAATCGCTGCACCATTTAAGCAAGCTGAAACGCAAATTCTGTACGGACAAGGCTT
TAACCGTGTTGGTGAGCTGATTGACCTTGGTGTTAAGCAAAAGCTAATTGAAAAAGCTGGTGCTTGGTACAGTTATAAAG
GCGATAAGATTGGTCAAGGTAAAGCAAATGCGGGTAAATTCTTAACCGAGAATCCAGCTATTGCCGATGAGATCGAAAAA
CAAATTCGTGAGTTGTTATTAACACCACCGCAAGAAGAAACAACTGAAGATGCTTCTCTTGATGCTATCGAAGCTGGTGA
AGATAAAGCATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.362

93.732

0.838
  recA Vibrio cholerae strain A1552

89.362

93.732

0.838
  recA Pseudomonas stutzeri DSM 10701

74.702

95.726

0.715
  recA Acinetobacter baylyi ADP1

73.653

95.157

0.701
  recA Acinetobacter baumannii D1279779

75

93.447

0.701
  recA Glaesserella parasuis strain SC1401

71.429

93.732

0.67
  recA Neisseria gonorrhoeae MS11

70.245

92.877

0.652
  recA Neisseria gonorrhoeae MS11

70.245

92.877

0.652
  recA Neisseria gonorrhoeae strain FA1090

70.245

92.877

0.652
  recA Ralstonia pseudosolanacearum GMI1000

69.512

93.447

0.65
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.815

92.308

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

64.486

91.453

0.59
  recA Streptococcus pneumoniae D39

61.31

95.726

0.587
  recA Streptococcus pneumoniae TIGR4

61.31

95.726

0.587
  recA Streptococcus pneumoniae R6

61.31

95.726

0.587
  recA Streptococcus pneumoniae Rx1

61.31

95.726

0.587
  recA Helicobacter pylori 26695

62.154

92.593

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.302

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.601

97.721

0.573
  recA Streptococcus mitis NCTC 12261

62.229

92.023

0.573
  recA Helicobacter pylori strain NCTC11637

61.846

92.593

0.573
  recA Streptococcus mutans UA159

61.231

92.593

0.567
  recA Streptococcus mitis SK321

61.61

92.023

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

92.877

0.556
  recA Streptococcus pyogenes NZ131

60

92.593

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.023

0.541