Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V7R83_RS02760 Genome accession   NZ_CP146288
Coordinates   686717..687820 (+) Length   367 a.a.
NCBI ID   WP_005671701.1    Uniprot ID   E7RU64
Organism   Lautropia mirabilis ATCC 51599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 681717..692820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R83_RS02730 (V7R83_02730) ribH 682434..682925 (+) 492 WP_005671693.1 6,7-dimethyl-8-ribityllumazine synthase -
  V7R83_RS02735 (V7R83_02735) nusB 682931..683398 (+) 468 WP_040530282.1 transcription antitermination factor NusB -
  V7R83_RS02740 (V7R83_02740) thiL 683399..684424 (+) 1026 WP_005671695.1 thiamine-phosphate kinase -
  V7R83_RS02745 (V7R83_02745) - 684421..684963 (+) 543 WP_005671697.1 phosphatidylglycerophosphatase A -
  V7R83_RS02750 (V7R83_02750) - 685168..685740 (+) 573 WP_050782006.1 nicotinamide-nucleotide amidohydrolase family protein -
  V7R83_RS02755 (V7R83_02755) fabG 685766..686533 (+) 768 WP_005671700.1 3-oxoacyl-ACP reductase FabG -
  V7R83_RS02760 (V7R83_02760) recA 686717..687820 (+) 1104 WP_005671701.1 recombinase RecA Machinery gene
  V7R83_RS02765 (V7R83_02765) - 687844..688539 (+) 696 WP_005671702.1 regulatory protein RecX -
  V7R83_RS02770 (V7R83_02770) sucC 688691..689857 (+) 1167 WP_005671703.1 ADP-forming succinate--CoA ligase subunit beta -
  V7R83_RS02775 (V7R83_02775) sucD 689888..690769 (+) 882 WP_005671704.1 succinate--CoA ligase subunit alpha -
  V7R83_RS02780 (V7R83_02780) - 690930..692120 (+) 1191 WP_169311643.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39331.82 Da        Isoelectric Point: 5.0191

>NTDB_id=942551 V7R83_RS02760 WP_005671701.1 686717..687820(+) (recA) [Lautropia mirabilis ATCC 51599]
MDDKARAEKAKALAAALAQIEKQFGKGSVMRMADGEVAPDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLT
LQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGVRLPELLISQPDTGEQALEICDALVRSGSVDLVVVDSVAALTPRAEIE
GDMGDALPGLQARLMSQALRKLTGSIQRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKKGDE
IIGNETRVKVVKNKVSPPFKSAEFDILYGEGTSREGEILDLGVTHGFVEKSGAWYSYNGERIGQGKDNAREYLREKPELA
LEIENRIREAVGVSTRGEAPQPVVDAEGAEPAAEGRRPRVAKDKDAE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=942551 V7R83_RS02760 WP_005671701.1 686717..687820(+) (recA) [Lautropia mirabilis ATCC 51599]
ATGGACGACAAGGCACGCGCAGAGAAGGCCAAGGCACTGGCTGCCGCTCTGGCACAAATCGAAAAGCAGTTCGGCAAGGG
TTCGGTCATGCGCATGGCCGACGGCGAAGTCGCCCCGGACATCGAAGTGGTCTCCACCGGTTCGCTGGGGCTGGACATCG
CACTGGGCGTTGGCGGCCTGCCGCGTGGCCGCGTCGTCGAGATCTACGGGCCGGAGTCTTCAGGCAAGACCACTCTCACG
CTGCAGGTCATTGCCGAGATGCAGAAGCTGGGTGGAACCTGCGCCTTCATCGATGCCGAGCACGCACTCGACGTGCAGTA
CGCCGCCAAGCTGGGCGTACGCCTGCCTGAACTGCTCATTTCCCAGCCGGACACCGGCGAGCAGGCTCTGGAAATCTGCG
ATGCCCTGGTCCGTTCCGGTTCGGTCGATCTGGTCGTGGTCGACTCGGTGGCTGCGCTCACGCCGCGCGCCGAAATCGAG
GGTGACATGGGCGACGCGCTGCCCGGTCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCTCCATCCA
GCGCACCAACACGCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAACCCCGAGACCACCA
CCGGCGGCAATGCACTCAAGTTCTACGCCTCCGTGCGTCTGGACATTCGCCGTACCGGTTCCATCAAGAAGGGCGACGAG
ATCATCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGAGCGCCGAGTTCGACATCCT
CTACGGCGAGGGCACCTCGCGTGAGGGTGAGATCCTCGACCTGGGCGTCACCCATGGCTTCGTGGAAAAGAGCGGCGCCT
GGTACAGCTACAACGGCGAACGCATCGGTCAGGGCAAGGACAACGCCCGCGAATATCTGCGCGAGAAACCCGAGCTGGCG
CTGGAGATCGAGAACCGCATCCGCGAGGCTGTCGGTGTCTCCACCCGTGGTGAGGCGCCGCAACCTGTCGTCGATGCCGA
GGGTGCCGAGCCCGCCGCCGAAGGGCGTCGTCCGCGCGTCGCCAAGGACAAGGACGCCGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7RU64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.686

90.191

0.755
  recA Neisseria gonorrhoeae MS11

69.801

95.64

0.668
  recA Neisseria gonorrhoeae strain FA1090

69.801

95.64

0.668
  recA Neisseria gonorrhoeae MS11

69.801

95.64

0.668
  recA Pseudomonas stutzeri DSM 10701

71.217

91.826

0.654
  recA Glaesserella parasuis strain SC1401

69.164

94.55

0.654
  recA Acinetobacter baylyi ADP1

71.125

89.646

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.136

88.011

0.635
  recA Vibrio cholerae strain A1552

72.136

88.011

0.635
  recA Acinetobacter baumannii D1279779

71.207

88.011

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.477

89.646

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.772

91.008

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

93.46

0.575
  recA Streptococcus mitis SK321

58.172

98.365

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

63.444

90.191

0.572
  recA Helicobacter pylori 26695

64.417

88.828

0.572
  recA Streptococcus pneumoniae Rx1

59.207

96.185

0.569
  recA Streptococcus pneumoniae TIGR4

59.207

96.185

0.569
  recA Streptococcus pneumoniae R6

59.207

96.185

0.569
  recA Streptococcus pneumoniae D39

59.207

96.185

0.569
  recA Helicobacter pylori strain NCTC11637

64.11

88.828

0.569
  recA Streptococcus pyogenes NZ131

62.121

89.918

0.559
  recA Streptococcus mitis NCTC 12261

61.145

90.463

0.553
  recA Streptococcus mutans UA159

61.329

90.191

0.553
  recA Lactococcus lactis subsp. cremoris KW2

60

91.281

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

88.556

0.545