Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V7R82_RS06270 Genome accession   NZ_CP146287
Coordinates   1342491..1343537 (-) Length   348 a.a.
NCBI ID   WP_070755352.1    Uniprot ID   -
Organism   Abiotrophia defectiva ATCC 49176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337491..1348537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R82_RS06265 (V7R82_06265) - 1339640..1342405 (+) 2766 WP_338541978.1 YfhO family protein -
  V7R82_RS06270 (V7R82_06270) recA 1342491..1343537 (-) 1047 WP_070755352.1 recombinase RecA Machinery gene
  V7R82_RS06275 (V7R82_06275) - 1343634..1344788 (-) 1155 WP_338541980.1 molybdopterin-binding protein -
  V7R82_RS06280 (V7R82_06280) - 1344998..1345699 (-) 702 WP_338541982.1 TIGR02206 family membrane protein -
  V7R82_RS06285 (V7R82_06285) zwf 1345903..1347336 (+) 1434 WP_338541984.1 glucose-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37215.63 Da        Isoelectric Point: 5.5478

>NTDB_id=942540 V7R82_RS06270 WP_070755352.1 1342491..1343537(-) (recA) [Abiotrophia defectiva ATCC 49176]
MNEDRKKALDKALKDIEKSFGKGSIMRLGEKVDTKISTIPSGSLALDIALGVGGYPRGRIIECYGPESSGKTTVALHAIA
EVQKQGGLAAFIDAEHALDPDYAAALGVNIDELLLSQPDTGEQGLAIADALVTSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGNVNKTKTICFFINQLREKVGIMFGNPETTPGGRALKFYSTVRLEVRKAELIKNGSEVIGSR
AKIKVVKNKVAPPFKEALVDIVYGKGISKVGELVDMAADLDIVNKAGSWYSYGEARIGQGREAAKQYLLDNPEVQAEIEA
RVRAHYKIGEAPETNEEAQVALGGLFQE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=942540 V7R82_RS06270 WP_070755352.1 1342491..1343537(-) (recA) [Abiotrophia defectiva ATCC 49176]
ATGAATGAAGACCGCAAAAAAGCCCTAGATAAGGCCCTAAAAGATATTGAAAAAAGCTTTGGTAAGGGCTCCATCATGCG
TCTGGGTGAAAAAGTCGACACCAAAATTTCGACCATTCCGTCAGGTTCCCTGGCTTTAGATATTGCTTTAGGGGTAGGTG
GCTATCCACGAGGCCGAATTATTGAATGTTATGGTCCAGAGTCTTCTGGTAAGACTACTGTGGCCCTCCATGCAATTGCC
GAAGTACAAAAACAAGGAGGCTTGGCTGCCTTCATTGATGCTGAGCATGCCTTGGACCCAGATTATGCTGCCGCTTTAGG
GGTTAACATTGATGAGTTACTCTTGTCCCAACCAGATACAGGTGAACAAGGCTTGGCTATCGCCGATGCCTTGGTAACAT
CAGGGGCGGTTGACATCATCGTCATTGACTCGGTTGCAGCCTTGGTACCACGCGCTGAAATCGATGGGGAGATGGGGGAT
GCCCATGTTGGCTTACAAGCCCGTCTCATGTCCCAAGCGCTTCGTAAATTATCCGGTAATGTCAACAAGACCAAAACCAT
CTGCTTCTTCATCAACCAATTGCGTGAAAAAGTAGGGATTATGTTCGGGAACCCTGAGACGACACCAGGTGGTCGTGCCC
TCAAATTCTACTCAACTGTTCGTTTAGAAGTGCGTAAGGCTGAGTTGATTAAGAACGGTAGCGAAGTGATTGGTAGCCGT
GCAAAAATTAAGGTTGTTAAGAACAAGGTGGCGCCACCATTTAAGGAAGCCCTAGTAGACATTGTCTACGGTAAAGGGAT
TTCTAAGGTGGGTGAGCTAGTCGATATGGCAGCTGATTTAGATATTGTCAACAAGGCAGGCTCTTGGTACTCCTACGGCG
AGGCTCGTATTGGGCAAGGTCGTGAAGCTGCTAAACAATACCTCTTGGACAACCCAGAAGTACAAGCAGAAATCGAAGCT
CGTGTTCGGGCTCACTATAAGATTGGCGAAGCACCTGAGACTAATGAAGAAGCTCAAGTGGCTTTAGGTGGACTTTTCCA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.163

98.851

0.753
  recA Bacillus subtilis subsp. subtilis str. 168

75.851

92.816

0.704
  recA Streptococcus mutans UA159

70.206

97.414

0.684
  recA Streptococcus mitis SK321

70.326

96.839

0.681
  recA Streptococcus mitis NCTC 12261

69.733

96.839

0.675
  recA Streptococcus pneumoniae Rx1

68.935

97.126

0.67
  recA Streptococcus pneumoniae D39

68.935

97.126

0.67
  recA Streptococcus pneumoniae R6

68.935

97.126

0.67
  recA Streptococcus pneumoniae TIGR4

68.935

97.126

0.67
  recA Streptococcus pyogenes NZ131

69.394

94.828

0.658
  recA Lactococcus lactis subsp. cremoris KW2

68.196

93.966

0.641
  recA Neisseria gonorrhoeae MS11

59.012

98.851

0.583
  recA Neisseria gonorrhoeae MS11

59.012

98.851

0.583
  recA Neisseria gonorrhoeae strain FA1090

59.012

98.851

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

94.253

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

94.253

0.569
  recA Acinetobacter baylyi ADP1

60.991

92.816

0.566
  recA Acinetobacter baumannii D1279779

60.615

93.391

0.566
  recA Pseudomonas stutzeri DSM 10701

59.215

95.115

0.563
  recA Vibrio cholerae strain A1552

60.372

92.816

0.56
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.372

92.816

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.877

93.103

0.557
  recA Helicobacter pylori 26695

57.396

97.126

0.557
  recA Helicobacter pylori strain NCTC11637

57.396

97.126

0.557
  recA Ralstonia pseudosolanacearum GMI1000

61.342

89.943

0.552
  recA Glaesserella parasuis strain SC1401

59.502

92.241

0.549