Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6984_RS10890 Genome accession   NZ_CP146256
Coordinates   2244411..2245475 (+) Length   354 a.a.
NCBI ID   WP_342759805.1    Uniprot ID   -
Organism   Kineothrix sp. IPX-CK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2239411..2250475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6984_RS10865 (V6984_10865) rpoZ 2239453..2239701 (+) 249 WP_031390158.1 DNA-directed RNA polymerase subunit omega -
  V6984_RS10870 (V6984_10870) rimO 2239760..2241097 (+) 1338 WP_342759803.1 30S ribosomal protein S12 methylthiotransferase RimO -
  V6984_RS10875 (V6984_10875) pgsA 2241081..2241617 (+) 537 WP_342759986.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6984_RS10880 (V6984_10880) - 2241651..2242916 (+) 1266 WP_342759987.1 competence/damage-inducible protein A -
  V6984_RS10885 (V6984_10885) - 2242940..2244073 (+) 1134 WP_342759804.1 hypothetical protein -
  V6984_RS10890 (V6984_10890) recA 2244411..2245475 (+) 1065 WP_342759805.1 recombinase RecA Machinery gene
  V6984_RS10895 (V6984_10895) - 2245494..2246117 (+) 624 WP_342759806.1 regulatory protein RecX -
  V6984_RS10900 (V6984_10900) rny 2246226..2247770 (+) 1545 WP_342759807.1 ribonuclease Y -
  V6984_RS10905 (V6984_10905) - 2247990..2249300 (+) 1311 WP_342759808.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  V6984_RS10910 (V6984_10910) - 2249319..2249861 (+) 543 WP_342759809.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38317.72 Da        Isoelectric Point: 5.8532

>NTDB_id=942398 V6984_RS10890 WP_342759805.1 2244411..2245475(+) (recA) [Kineothrix sp. IPX-CK]
MEREERLKALDAALVQIEKQYGKGAVMKLGDSSAQMNVETIPTGALSLDIALGLGGIPKGRVVEIYGPESSGKTTVTLHM
IAEVQKRGGIAGFIDAEHALDPAYAKNIGVDVDNLYISQPDNGEQALEITETMVRSGAIDIVVVDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTAVISKSNCTVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRLDVRRIESLKQSGEIVG
NRTRVKVVKNKIAPPFKEAEFDIMFGEGISFAGDVLDLASEVNIVNKSGAWYAYEGNKVGQGRENAKQYLKDNPAVCAEI
EKKVREHFGLSSDSIEKADETSEKKKTSEKKKAE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=942398 V6984_RS10890 WP_342759805.1 2244411..2245475(+) (recA) [Kineothrix sp. IPX-CK]
ATGGAAAGAGAAGAAAGATTGAAAGCGCTTGATGCGGCACTGGTACAGATAGAAAAGCAGTACGGAAAGGGTGCGGTTAT
GAAGCTGGGAGATTCCAGCGCACAGATGAATGTGGAAACCATTCCTACGGGGGCCTTAAGTCTCGATATCGCGTTGGGCC
TGGGCGGAATACCCAAGGGAAGAGTCGTGGAGATATACGGGCCGGAATCCAGCGGTAAGACCACAGTTACCTTACATATG
ATTGCAGAAGTACAGAAGAGAGGCGGGATAGCTGGTTTCATCGATGCAGAGCACGCGCTGGACCCTGCCTATGCGAAGAA
TATCGGGGTGGATGTAGACAACTTGTATATTTCCCAGCCTGATAACGGTGAGCAGGCGCTGGAAATCACAGAGACGATGG
TGCGTTCCGGGGCAATTGATATCGTTGTAGTGGACTCGGTGGCAGCACTTGTGCCTAAAGCAGAAATAGACGGCGATATG
GGCGACAGTCATGTGGGACTTCAGGCGCGTTTGATGTCGCAGGCCCTTAGAAAGCTGACGGCGGTAATCAGCAAATCCAA
TTGTACGGTAATATTTATCAATCAGCTTCGTGAGAAAGTAGGTGTTATGTTCGGGAATCCGGAGACAACTACCGGCGGAC
GCGCACTTAAATTCTACTCCTCCGTCCGCCTTGACGTAAGAAGAATCGAATCGCTGAAGCAGAGCGGAGAAATTGTTGGA
AATAGAACGAGGGTAAAGGTTGTTAAAAATAAAATAGCCCCTCCGTTTAAAGAAGCGGAATTTGATATTATGTTCGGAGA
AGGAATCTCTTTTGCTGGCGATGTGCTGGATTTGGCATCGGAAGTCAATATTGTCAATAAAAGCGGAGCATGGTACGCTT
ACGAGGGAAATAAGGTGGGACAGGGCCGAGAGAATGCGAAGCAGTATCTGAAGGACAATCCGGCGGTGTGTGCGGAGATC
GAGAAGAAGGTGCGGGAGCATTTCGGCTTAAGCAGCGATTCGATAGAAAAGGCGGATGAGACGTCGGAAAAGAAGAAAAC
TTCGGAGAAGAAAAAAGCGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.767

93.503

0.624
  recA Acinetobacter baylyi ADP1

64.793

95.48

0.619
  recA Streptococcus pneumoniae D39

62.216

99.435

0.619
  recA Streptococcus pneumoniae Rx1

62.216

99.435

0.619
  recA Streptococcus pneumoniae TIGR4

62.216

99.435

0.619
  recA Streptococcus pneumoniae R6

62.216

99.435

0.619
  recA Streptococcus mutans UA159

62.393

99.153

0.619
  recA Streptococcus mitis SK321

65.152

93.22

0.607
  recA Helicobacter pylori 26695

62.281

96.61

0.602
  recA Streptococcus mitis NCTC 12261

64.545

93.22

0.602
  recA Acinetobacter baumannii D1279779

65.538

91.808

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.545

93.22

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.537

95.763

0.599
  recA Vibrio cholerae strain A1552

62.537

95.763

0.599
  recA Lactococcus lactis subsp. cremoris KW2

63.473

94.35

0.599
  recA Helicobacter pylori strain NCTC11637

61.988

96.61

0.599
  recA Streptococcus pyogenes NZ131

64.242

93.22

0.599
  recA Glaesserella parasuis strain SC1401

62.13

95.48

0.593
  recA Pseudomonas stutzeri DSM 10701

63.222

92.938

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.11

92.655

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

62.538

93.503

0.585
  recA Neisseria gonorrhoeae strain FA1090

61.677

94.35

0.582
  recA Neisseria gonorrhoeae MS11

61.677

94.35

0.582
  recA Neisseria gonorrhoeae MS11

61.677

94.35

0.582
  recA Ralstonia pseudosolanacearum GMI1000

64.127

88.983

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

90.96

0.537