Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6V88_RS07740 Genome accession   NZ_CP146253
Coordinates   1693324..1694385 (+) Length   353 a.a.
NCBI ID   WP_062838483.1    Uniprot ID   -
Organism   Achromobacter sp. E1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1688324..1699385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6V88_RS07720 (V6V88_07720) - 1688400..1688609 (+) 210 WP_008164281.1 hypothetical protein -
  V6V88_RS07725 (V6V88_07725) - 1689015..1690691 (-) 1677 WP_142049944.1 MFS transporter -
  V6V88_RS07730 (V6V88_07730) - 1690872..1692248 (-) 1377 WP_280003873.1 sensor histidine kinase -
  V6V88_RS07735 (V6V88_07735) - 1692361..1693050 (-) 690 WP_062838484.1 response regulator transcription factor -
  V6V88_RS07740 (V6V88_07740) recA 1693324..1694385 (+) 1062 WP_062838483.1 recombinase RecA Machinery gene
  V6V88_RS07745 (V6V88_07745) recX 1694509..1695237 (+) 729 WP_062838482.1 recombination regulator RecX -
  V6V88_RS07750 (V6V88_07750) - 1695335..1696252 (-) 918 WP_223574776.1 LysR family transcriptional regulator -
  V6V88_RS07755 (V6V88_07755) metE 1696438..1698735 (+) 2298 WP_280003869.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37871.26 Da        Isoelectric Point: 5.3371

>NTDB_id=942356 V6V88_RS07740 WP_062838483.1 1693324..1694385(+) (recA) [Achromobacter sp. E1]
MDDKTTKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVSHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFVDAEHALDVQYASKLGVNLADLLISQPDTGEQALEITDALVRSGSVDLIVVDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVVDKSGAWYSYNGNRIGQGKDNVREYLKEH
KELAIEIENRVRENQGIVSRAAEFVPTAEDTAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=942356 V6V88_RS07740 WP_062838483.1 1693324..1694385(+) (recA) [Achromobacter sp. E1]
ATGGACGACAAAACCACCAAGGCCGCCGCTTCGGAAAAGGCCAAGGCGCTCGCCGCAGCGCTTTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGACAACGAAGTCTCGCACGACATCCAGGTGGTTTCCACGGGTTCGCTCG
GTCTGGATATCGCGCTGGGCGTCGGCGGCTTGCCGCGCGGCCGTGTCGTCGAAATCTACGGTCCGGAATCGTCGGGCAAG
ACCACCCTCACGCTGCAGGTCGTCGCCGAAATGCAAAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCGGAACACGCACT
GGATGTCCAGTACGCGTCCAAGCTGGGCGTCAACCTGGCCGACCTCTTGATCTCGCAGCCGGACACGGGCGAGCAGGCGC
TGGAAATCACCGACGCGCTGGTGCGCTCGGGTTCGGTCGACCTCATCGTCGTCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAACC
CCGAGACCACCACCGGCGGCAACGCGCTCAAGTTCTACGCATCCGTGCGCCTGGATATCCGCCGCATCGGTTCCATCAAG
AAGGGCGACGAGGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTTGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCGCCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGGCCGCCAACGTCGTCGACA
AGTCGGGCGCCTGGTACAGCTACAACGGCAACCGCATCGGTCAGGGCAAGGACAACGTGCGCGAATACCTGAAAGAGCAT
AAGGAACTCGCCATCGAAATCGAAAACCGCGTCCGCGAAAACCAGGGCATCGTCAGCCGCGCCGCTGAATTCGTGCCCAC
GGCGGAAGACACCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.102

99.717

0.819
  recA Pseudomonas stutzeri DSM 10701

72.434

96.601

0.7
  recA Neisseria gonorrhoeae MS11

72.866

92.918

0.677
  recA Neisseria gonorrhoeae MS11

72.866

92.918

0.677
  recA Neisseria gonorrhoeae strain FA1090

72.866

92.918

0.677
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.832

90.935

0.671
  recA Vibrio cholerae strain A1552

73.832

90.935

0.671
  recA Acinetobacter baylyi ADP1

69.501

96.601

0.671
  recA Acinetobacter baumannii D1279779

72.897

90.935

0.663
  recA Glaesserella parasuis strain SC1401

71.963

90.935

0.654
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.465

94.334

0.618
  recA Latilactobacillus sakei subsp. sakei 23K

63.45

96.884

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.644

92.351

0.606
  recA Helicobacter pylori 26695

61.671

98.3

0.606
  recA Helicobacter pylori strain NCTC11637

61.383

98.3

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.635

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

91.501

0.578
  recA Streptococcus pneumoniae D39

60

96.317

0.578
  recA Streptococcus pneumoniae R6

60

96.317

0.578
  recA Streptococcus pneumoniae TIGR4

60

96.317

0.578
  recA Streptococcus pneumoniae Rx1

60

96.317

0.578
  recA Streptococcus mitis NCTC 12261

59.412

96.317

0.572
  recA Streptococcus mitis SK321

59.412

96.317

0.572
  recA Streptococcus pyogenes NZ131

60

94.901

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.824

96.317

0.567
  recA Streptococcus mutans UA159

58.235

96.317

0.561