Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6P93_RS16775 Genome accession   NZ_CP146227
Coordinates   3824246..3825328 (-) Length   360 a.a.
NCBI ID   WP_168366262.1    Uniprot ID   -
Organism   Dickeya sp. CFBP 1278     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3819246..3830328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6P93_RS16760 (V6P93_16755) csrA 3820442..3820627 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  V6P93_RS16765 (V6P93_16760) alaS 3820950..3823577 (-) 2628 WP_342699881.1 alanine--tRNA ligase -
  V6P93_RS16770 (V6P93_16765) recX 3823715..3824203 (-) 489 WP_342699882.1 recombination regulator RecX -
  V6P93_RS16775 (V6P93_16770) recA 3824246..3825328 (-) 1083 WP_168366262.1 recombinase RecA Machinery gene
  V6P93_RS16780 (V6P93_16775) pncC 3825438..3825926 (-) 489 WP_342699883.1 nicotinamide-nucleotide amidase -
  V6P93_RS16785 (V6P93_16780) - 3827723..3828130 (-) 408 WP_342699884.1 hypothetical protein -
  V6P93_RS16790 (V6P93_16785) - 3828242..3828751 (+) 510 WP_342699885.1 SRPBCC family protein -
  V6P93_RS16795 (V6P93_16790) cybB 3828811..3829344 (-) 534 WP_407321686.1 cytochrome b561 -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38505.99 Da        Isoelectric Point: 4.8195

>NTDB_id=942200 V6P93_RS16775 WP_168366262.1 3824246..3825328(-) (recA) [Dickeya sp. CFBP 1278]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELVDLGVKFKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAISAEL
DKKLRELLLHKGNEAVSGGVSSSESAEYNEEAAGELNDDF

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=942200 V6P93_RS16775 WP_168366262.1 3824246..3825328(-) (recA) [Dickeya sp. CFBP 1278]
ATGGCTATTGATGAGAACAAACAAAAGGCACTGGCGGCAGCGCTGGGTCAGATCGAAAAACAATTCGGTAAAGGTTCTAT
CATGCGTTTGGGCGAGGATCGCTCAATGGATGTTGAAACGATCTCCACAGGTTCCTTGTCGCTTGATATCGCACTGGGTG
TTGGTGGTTTGCCAATGGGCCGTATTGTTGAGATTTACGGTCCGGAGTCCTCTGGTAAAACGACGCTGACACTGCAGGTG
ATTGCTGCCGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATTGATGCCGAACACGCGCTGGATCCGATCTACGCTAAAAA
GTTGGGTGTTGATATCGATAATCTGCTGTGTTCCCAGCCAGATACCGGCGAGCAGGCACTGGAGATTTGTGATGCGCTGG
CACGTTCTGGTGCAGTTGATGTCATTATCGTCGACTCCGTTGCTGCGCTGACGCCGAAAGCAGAAATTGAAGGGGAAATC
GGTGATTCCCACATGGGGCTTGCGGCTCGTATGATGAGTCAGGCTATGCGTAAGCTGGCCGGTAACCTCAAGCAATCCAA
TACACTGCTGATCTTTATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCCGAAACCACGACCGGTGGTA
ACGCGCTGAAATTCTATGCGTCTGTCCGTCTGGATATTCGCCGTATTGGCTCTATCAAAGAAGGTGAAGAAGTTGTCGGG
AGTGAAACCCGCGTTAAAGTTGTGAAGAACAAGGTTGCAGCGCCATTCAAGCAGGCTGAATTCCAGATTCTGTATGGCGA
AGGGATTAATACCTTCGGTGAGCTGGTTGATCTTGGCGTGAAGTTTAAGCTGATTGAAAAAGCCGGTGCCTGGTACAGCT
ACAATGGTGACAAAATTGGTCAGGGTAAGGCGAACGCCTGTAATTTCCTGAAAGAGAACCCGGCCATCTCTGCTGAGCTC
GACAAGAAGCTGCGCGAATTGTTGCTGCATAAAGGTAACGAAGCGGTATCGGGTGGCGTCAGCAGTAGTGAAAGTGCCGA
GTACAATGAAGAGGCCGCTGGCGAACTGAACGACGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.578

94.722

0.792
  recA Vibrio cholerae strain A1552

83.578

94.722

0.792
  recA Pseudomonas stutzeri DSM 10701

75.229

90.833

0.683
  recA Acinetobacter baylyi ADP1

70.115

96.667

0.678
  recA Acinetobacter baumannii D1279779

73.03

91.667

0.669
  recA Glaesserella parasuis strain SC1401

68.091

97.5

0.664
  recA Neisseria gonorrhoeae MS11

70.552

90.556

0.639
  recA Neisseria gonorrhoeae MS11

70.552

90.556

0.639
  recA Neisseria gonorrhoeae strain FA1090

70.552

90.556

0.639
  recA Ralstonia pseudosolanacearum GMI1000

71.061

86.389

0.614
  recA Streptococcus mitis SK321

58.889

100

0.589
  recA Streptococcus mitis NCTC 12261

58.889

100

0.589
  recA Streptococcus pneumoniae Rx1

59.605

98.333

0.586
  recA Streptococcus pneumoniae TIGR4

59.605

98.333

0.586
  recA Streptococcus pneumoniae R6

59.605

98.333

0.586
  recA Streptococcus pneumoniae D39

59.605

98.333

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.885

96.944

0.581
  recA Helicobacter pylori 26695

62.691

90.833

0.569
  recA Helicobacter pylori strain NCTC11637

62.385

90.833

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

89.167

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.056

0.558
  recA Streptococcus mutans UA159

61.846

90.278

0.558
  recA Lactococcus lactis subsp. cremoris KW2

61.92

89.722

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

90.278

0.556
  recA Streptococcus pyogenes NZ131

61.538

90.278

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

90.556

0.536