Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6U66_RS00345 Genome accession   NZ_CP145864
Coordinates   57782..58921 (+) Length   379 a.a.
NCBI ID   WP_002886327.1    Uniprot ID   A0AB33ZAI2
Organism   Streptococcus salivarius strain KSS7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 59084..59557 57782..58921 flank 163


Gene organization within MGE regions


Location: 57782..59557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS00345 (V6U66_00345) recA 57782..58921 (+) 1140 WP_002886327.1 recombinase RecA Machinery gene
  V6U66_RS00350 (V6U66_00350) tnpA 59084..59557 (+) 474 WP_002891962.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40951.51 Da        Isoelectric Point: 4.7970

>NTDB_id=940547 V6U66_RS00345 WP_002886327.1 57782..58921(+) (recA) [Streptococcus salivarius strain KSS7]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDLGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPDIFEEIDHKVRVHYGLIEPDEEDIVEEAQVEETSDELVLDLDSTIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=940547 V6U66_RS00345 WP_002886327.1 57782..58921(+) (recA) [Streptococcus salivarius strain KSS7]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATTACAAAGAAATTTGGAGATGAGCGTCGTAAAGCACTTGACGATGCTTT
GAAGAATATTGAAAAAGATTTTGGTAAGGGTGCGGTTATGCGTCTTGGTGAGCGTGCAGAGCAGAAAGTTCAAGTTATGA
GTTCAGGCTCGCTGGCTTTGGATATTGCTCTTGGTGCAGGTGGTTATCCTAAAGGTCGTATTATCGAAATTTACGGACCA
GAATCGTCAGGTAAGACAACTGTAGCCCTCCATGCTGTTGCTCAAACACAAAAAGAAGGTGGAATTGCTGCCTTTATCGA
TGCAGAGCATGCCCTTGACCCTGCTTATGCGGCAGCCCTAGGTGTTAATATCGATGAGCTTCTTTTGTCACAACCTGATT
CAGGTGAACAAGGTCTCGAAATTGCTGGTAAGCTGATTGACTCTGGTGCAGTTGATTTGGTTGTTGTTGACTCAGTTGCA
GCTTTGGTACCTCGAGCAGAAATTGATGGAGATATTGGTGACAGCCATGTCGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTTTCTGCTTCTATCAATAAAACAAAAACAATTGCTATCTTCATTAACCAATTGCGTGAAAAAGTTGGTA
TTATGTTTGGTAATCCAGAAACAACCCCTGGTGGACGTGCTCTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGA
AATACGCAAATCAAAGGGACTGGTGATAAAAAAGACCAAAATGTTGGTAAGGAAACTAAAATTAAGGTTGTCAAAAACAA
GGTTGCTCCACCATTTAAAGAAGCCTTTGTTGAAATTATGTATGGTGAAGGGATTTCACAAACAGGTGAGCTTGTAAAAA
TCGCTAGTGACTTAGGTATTATTCAAAAAGCTGGAGCCTGGTTCTCATACAATGGAGAGAAGATTGGTCAAGGATCTGAA
AATGCGAAAAAATATTTGGCAGATCATCCAGATATTTTTGAAGAAATTGATCATAAAGTACGTGTACACTATGGTTTGAT
TGAACCAGATGAAGAGGATATTGTTGAAGAAGCACAAGTTGAAGAAACATCTGATGAACTTGTTTTAGACCTAGATTCAA
CCATTGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902
  recA Streptococcus pyogenes NZ131

89.974

100

0.9
  recA Streptococcus mitis NCTC 12261

86.423

100

0.873
  recA Streptococcus mitis SK321

86.352

100

0.868
  recA Streptococcus pneumoniae Rx1

85.195

100

0.865
  recA Streptococcus pneumoniae D39

85.195

100

0.865
  recA Streptococcus pneumoniae R6

85.195

100

0.865
  recA Streptococcus pneumoniae TIGR4

85.195

100

0.865
  recA Lactococcus lactis subsp. cremoris KW2

78

92.348

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

69.231

89.182

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

86.807

0.594
  recA Glaesserella parasuis strain SC1401

56.216

97.625

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.472

89.446

0.541
  recA Acinetobacter baumannii D1279779

62.462

85.752

0.536
  recA Acinetobacter baylyi ADP1

62.154

85.752

0.533
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae MS11

60.725

87.335

0.53
  recA Neisseria gonorrhoeae strain FA1090

60.725

87.335

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.224

0.53
  recA Vibrio cholerae strain A1552

58.944

89.974

0.53
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.944

89.974

0.53
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.522

91.029

0.515
  recA Helicobacter pylori strain NCTC11637

56.305

89.974

0.507
  recA Helicobacter pylori 26695

56.305

89.974

0.507
  recA Ralstonia pseudosolanacearum GMI1000

57.576

87.071

0.501
  recA Pseudomonas stutzeri DSM 10701

58.154

85.752

0.499