Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V3I05_RS07200 Genome accession   NZ_CP145316
Coordinates   1432609..1433646 (+) Length   345 a.a.
NCBI ID   WP_295702120.1    Uniprot ID   -
Organism   Helicobacter mastomyrinus strain Hm-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427609..1438646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I05_RS07180 (V3I05_07180) - 1427780..1429423 (-) 1644 WP_295702281.1 cation acetate symporter -
  V3I05_RS07185 (V3I05_07185) - 1429435..1429821 (-) 387 WP_300449115.1 DUF485 domain-containing protein -
  V3I05_RS07190 (V3I05_07190) - 1430273..1431553 (-) 1281 WP_343353133.1 hypothetical protein -
  V3I05_RS07195 (V3I05_07195) - 1431649..1432506 (-) 858 WP_300449052.1 MqnA/MqnD/SBP family protein -
  V3I05_RS07200 (V3I05_07200) recA 1432609..1433646 (+) 1038 WP_295702120.1 recombinase RecA Machinery gene
  V3I05_RS07205 (V3I05_07205) eno 1433669..1434946 (+) 1278 WP_295702118.1 phosphopyruvate hydratase -
  V3I05_RS07210 (V3I05_07210) - 1434959..1435225 (+) 267 WP_300733428.1 hypothetical protein -
  V3I05_RS07215 (V3I05_07215) - 1435335..1435823 (+) 489 WP_343353135.1 AMIN domain-containing protein -
  V3I05_RS07220 (V3I05_07220) - 1435827..1436351 (+) 525 WP_343353136.1 shikimate kinase -
  V3I05_RS07225 (V3I05_07225) - 1436440..1437537 (+) 1098 WP_343353138.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  V3I05_RS07230 (V3I05_07230) - 1437530..1438498 (+) 969 WP_295702108.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37541.29 Da        Isoelectric Point: 5.3573

>NTDB_id=938429 V3I05_RS07200 WP_295702120.1 1432609..1433646(+) (recA) [Helicobacter mastomyrinus strain Hm-17]
MVDEKKQKAIELALKQIDKAFGKGALVRLGDKQVEKVECISTGSLGLDMALGIGGVPKGRIIEIYGPESSGKTTLSLQIV
AECQKNGGICAFIDAEHALDVYYAKRLGVDTENLLVSQPDTGEQALEILETLTRSGAVDLIVIDSVAALTPKAEIEGDMG
DQHVGLQARLMSHALRKITGVLHKMNATLIFINQIRMKIGVMGYGSPETTTGGNALKFYASVRIDVRRIATLKQNDQQIG
NRTKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGIKLDLIDKSGAWLSYNDKKLGQGRENAKLLLKEDKALAEEI
IAKIKEQIGAQDEILPLPDEPESNE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=938429 V3I05_RS07200 WP_295702120.1 1432609..1433646(+) (recA) [Helicobacter mastomyrinus strain Hm-17]
ATGGTAGATGAGAAAAAGCAAAAAGCTATTGAACTTGCTTTGAAGCAAATTGATAAAGCCTTTGGCAAGGGTGCTTTGGT
ACGATTAGGTGATAAGCAGGTAGAAAAAGTAGAGTGTATATCCACGGGCTCGCTTGGGCTTGATATGGCTCTAGGCATAG
GTGGTGTGCCTAAGGGTAGGATTATTGAAATCTATGGACCAGAATCAAGTGGAAAGACGACTTTAAGCTTACAAATCGTG
GCAGAATGTCAAAAAAATGGTGGTATTTGCGCATTCATAGACGCAGAACATGCCCTTGACGTATATTATGCCAAACGTTT
GGGTGTAGATACAGAGAATCTGCTTGTATCTCAGCCTGATACGGGAGAACAGGCATTAGAGATTCTAGAAACGCTCACAC
GTAGCGGTGCAGTGGATTTAATAGTTATAGATTCGGTAGCAGCCCTCACGCCTAAAGCAGAGATTGAAGGCGATATGGGA
GACCAACACGTAGGCTTACAAGCACGGCTTATGAGCCACGCTTTGCGTAAGATTACAGGTGTATTACACAAGATGAATGC
GACTTTGATTTTTATTAATCAAATTCGTATGAAAATTGGCGTAATGGGCTATGGTAGTCCAGAGACTACTACTGGTGGGA
ATGCGCTAAAATTTTATGCGAGTGTGCGTATTGATGTACGCCGTATTGCAACATTGAAGCAAAATGACCAGCAAATCGGA
AATCGCACAAAAGCAAAAGTAGTGAAAAATAAAGTCGCTCCACCTTTCCGCGAAGCAGAGTTTGATATTATGTTTGGCGA
GGGTATTAGCAAAGAGGGCGAGATTATCGATTATGGCATCAAGCTTGATCTTATCGATAAAAGTGGTGCGTGGCTTAGTT
ACAATGACAAAAAGCTTGGGCAAGGACGCGAGAATGCAAAACTGCTCTTAAAAGAGGATAAGGCATTAGCAGAGGAGATT
ATTGCAAAGATTAAGGAGCAAATTGGCGCTCAAGATGAGATTCTGCCTTTACCCGATGAGCCAGAATCTAATGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

88.529

98.551

0.872
  recA Helicobacter pylori strain NCTC11637

88.529

98.551

0.872
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.915

95.072

0.722
  recA Acinetobacter baylyi ADP1

62.857

100

0.638
  recA Neisseria gonorrhoeae MS11

64.671

96.812

0.626
  recA Neisseria gonorrhoeae strain FA1090

64.671

96.812

0.626
  recA Neisseria gonorrhoeae MS11

64.671

96.812

0.626
  recA Acinetobacter baumannii D1279779

65.443

94.783

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.582

97.101

0.617
  recA Ralstonia pseudosolanacearum GMI1000

67.732

90.725

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.123

93.913

0.612
  recA Pseudomonas stutzeri DSM 10701

63.303

94.783

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

94.783

0.597
  recA Vibrio cholerae strain A1552

62.997

94.783

0.597
  recA Glaesserella parasuis strain SC1401

61.89

95.072

0.588
  recA Lactococcus lactis subsp. cremoris KW2

59.76

96.522

0.577
  recA Streptococcus pyogenes NZ131

59.697

95.652

0.571
  recA Streptococcus mitis NCTC 12261

59.337

96.232

0.571
  recA Streptococcus mitis SK321

59.337

96.232

0.571
  recA Streptococcus pneumoniae R6

59.036

96.232

0.568
  recA Streptococcus pneumoniae Rx1

59.036

96.232

0.568
  recA Streptococcus pneumoniae D39

59.036

96.232

0.568
  recA Streptococcus pneumoniae TIGR4

59.036

96.232

0.568
  recA Streptococcus mutans UA159

58.912

95.942

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

55.908

100

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.317

95.072

0.545