Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SNR28_RS23805 Genome accession   NZ_CP145311
Coordinates   3065746..3066846 (-) Length   366 a.a.
NCBI ID   WP_375751362.1    Uniprot ID   -
Organism   Vibrio sp. HN007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3060746..3071846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS23785 (SNR28_23760) csrA 3060876..3061073 (-) 198 WP_277829125.1 carbon storage regulator CsrA -
  SNR28_RS23790 (SNR28_23765) - 3061172..3062356 (-) 1185 WP_375751359.1 aspartate kinase -
  SNR28_RS23795 (SNR28_23770) alaS 3062501..3065089 (-) 2589 WP_375751360.1 alanine--tRNA ligase -
  SNR28_RS23800 (SNR28_23775) recX 3065245..3065688 (-) 444 WP_375751361.1 recombination regulator RecX -
  SNR28_RS23805 (SNR28_23780) recA 3065746..3066846 (-) 1101 WP_375751362.1 recombinase RecA Machinery gene
  SNR28_RS23810 (SNR28_23785) modF 3066945..3068396 (+) 1452 WP_375751363.1 molybdate ABC transporter ATP-binding protein ModF -
  SNR28_RS23815 (SNR28_23790) - 3068521..3070161 (+) 1641 WP_375751364.1 tetratricopeptide repeat protein -
  SNR28_RS23820 (SNR28_23795) - 3070164..3070619 (-) 456 WP_375751365.1 NUDIX pyrophosphatase -
  SNR28_RS23825 (SNR28_23800) - 3070621..3071031 (-) 411 WP_375751366.1 VOC family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39556.48 Da        Isoelectric Point: 5.5627

>NTDB_id=938420 SNR28_RS23805 WP_375751362.1 3065746..3066846(-) (recA) [Vibrio sp. HN007]
MNQQYNDRKSLRTLCVEKVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIV
EIYGPESSGKTTLTLELIAAAQRDGKTCAFVDAEHALDPVYAKKLGVNIDDLLVSQPDTGEQALEICDALARSGAVDVLV
VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVR
LDIRRTGAIKEGDEVVGNETKIKVVKNKIAAPFKEAHTQIMYGQGFNAEGELIDLGVKHKLVEKAGAWYSYKGDKIGQGK
ANACKFMRENPEAAKEIDTKLREMLLTPAVIEEDDAAPAEMPVDGK

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=938420 SNR28_RS23805 WP_375751362.1 3065746..3066846(-) (recA) [Vibrio sp. HN007]
ATGAATCAACAGTATAATGATCGAAAAAGTTTAAGAACACTTTGTGTGGAGAAAGTAATGGACGAGAACAAACAGAAGGC
TCTTGCCGCGGCGCTTGGTCAGATTGAAAAACAATTTGGTAAAGGTTCTATCATGCGCCTTGGTGATAACCGCACTATGG
ATGTAGAAACAGTATCAACAGGCTCACTGTCTCTTGATATTGCTTTGGGTGCTGGCGGCCTTCCAATGGGACGTATTGTT
GAAATTTACGGTCCAGAAAGTTCAGGTAAAACAACGCTAACTCTTGAGTTGATTGCTGCAGCTCAGCGTGATGGAAAAAC
TTGTGCGTTCGTTGATGCTGAACATGCTCTTGATCCTGTCTACGCAAAGAAACTGGGTGTAAACATTGATGACCTACTTG
TATCTCAGCCAGATACAGGTGAACAGGCGCTGGAAATTTGTGATGCACTTGCCCGTTCTGGTGCTGTAGATGTACTGGTT
GTCGACTCTGTTGCTGCTCTTACTCCAAAAGCCGAAATCGAAGGTGAAATGGGTGATAGTCACATGGGGCTGCAAGCTCG
TATGCTTTCTCAGGCAATGCGTAAGCTAACAGGTAACCTTAAGCAGTCTAACTGTATGTGTATCTTCATCAACCAGATCC
GTATGAAGATTGGTGTTATGTTCGGTAACCCAGAAACAACAACGGGTGGTAATGCGCTTAAGTTCTACGCTTCTGTTCGT
CTTGATATTCGTCGTACTGGCGCTATCAAAGAGGGCGATGAGGTTGTTGGTAACGAAACTAAGATTAAAGTTGTTAAGAA
CAAAATTGCAGCACCATTTAAAGAAGCTCACACTCAGATTATGTACGGCCAGGGCTTTAACGCGGAAGGTGAACTAATCG
ACCTTGGTGTTAAGCACAAGCTGGTTGAAAAAGCGGGTGCATGGTACAGCTACAAAGGCGATAAAATTGGTCAGGGTAAA
GCAAATGCTTGTAAGTTCATGCGTGAAAACCCTGAAGCAGCAAAAGAGATTGATACAAAACTTCGTGAGATGCTGTTGAC
TCCAGCAGTTATTGAAGAAGATGACGCTGCTCCAGCTGAAATGCCTGTAGACGGCAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

93.313

89.891

0.839
  recA Vibrio cholerae O1 biovar El Tor strain E7946

93.313

89.891

0.839
  recA Acinetobacter baumannii D1279779

72.886

93.716

0.683
  recA Pseudomonas stutzeri DSM 10701

75.61

89.617

0.678
  recA Acinetobacter baylyi ADP1

73.939

90.164

0.667
  recA Glaesserella parasuis strain SC1401

69.412

92.896

0.645
  recA Neisseria gonorrhoeae MS11

65.418

94.809

0.62
  recA Neisseria gonorrhoeae MS11

65.418

94.809

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.418

94.809

0.62
  recA Ralstonia pseudosolanacearum GMI1000

72.063

86.066

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.947

92.623

0.574
  recA Streptococcus mutans UA159

59.195

95.082

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

87.705

0.557
  recA Streptococcus pneumoniae TIGR4

61.631

90.437

0.557
  recA Streptococcus pneumoniae Rx1

61.631

90.437

0.557
  recA Streptococcus pneumoniae D39

61.631

90.437

0.557
  recA Streptococcus pneumoniae R6

61.631

90.437

0.557
  recA Streptococcus mitis NCTC 12261

61.329

90.437

0.555
  recA Streptococcus mitis SK321

61.329

90.437

0.555
  recA Helicobacter pylori strain NCTC11637

61.162

89.344

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

90.437

0.544
  recA Helicobacter pylori 26695

60.856

89.344

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.461

86.612

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

59.459

90.984

0.541
  recA Streptococcus pyogenes NZ131

59.517

90.437

0.538
  recA Lactococcus lactis subsp. cremoris KW2

60.062

88.251

0.53