Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D5261_RS06590 Genome accession   NZ_AP025739
Coordinates   1541320..1542339 (+) Length   339 a.a.
NCBI ID   WP_119324333.1    Uniprot ID   A0A402D4A8
Organism   Capsulimonas corticalis strain AX-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536320..1547339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5261_RS06565 - 1536458..1537309 (+) 852 WP_165864581.1 AraC family transcriptional regulator -
  D5261_RS06570 (CCAX7_12680) - 1537368..1537658 (+) 291 WP_119324337.1 YciI family protein -
  D5261_RS06575 (CCAX7_12690) - 1538047..1538826 (+) 780 WP_119324336.1 ParA family protein -
  D5261_RS06580 (CCAX7_12700) - 1538813..1539751 (+) 939 WP_119324335.1 ParB/RepB/Spo0J family partition protein -
  D5261_RS06585 (CCAX7_12710) - 1539857..1541128 (+) 1272 WP_119324334.1 competence/damage-inducible protein A -
  D5261_RS06590 (CCAX7_12720) recA 1541320..1542339 (+) 1020 WP_119324333.1 recombinase RecA Machinery gene
  D5261_RS06595 (CCAX7_12730) - 1542383..1543063 (+) 681 WP_119324332.1 RecX family transcriptional regulator -
  D5261_RS06600 (CCAX7_12740) rny 1543300..1544832 (+) 1533 WP_119324331.1 ribonuclease Y -
  D5261_RS06605 (CCAX7_12750) - 1544930..1545715 (+) 786 WP_119324330.1 TIGR00282 family metallophosphoesterase -
  D5261_RS06610 (CCAX7_12760) - 1545765..1547072 (+) 1308 WP_119324329.1 PKD domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36413.61 Da        Isoelectric Point: 5.3181

>NTDB_id=93838 D5261_RS06590 WP_119324333.1 1541320..1542339(+) (recA) [Capsulimonas corticalis strain AX-7]
MDKEKALDIALSQLEKQFGKGSVMRLGESPKQSVEAISTGSLALDLALGVGGVPRGRITEIHGAESSGKTTIAYHIIAEA
QKLGGTAAFVDAEHSVDPEYARNLGVDINKLLVSQPNNGEEALEIMDALVRSGAVDVVVLDSVAALVPKAEIEGEMGDSH
MGLQARLMSQAMRKLNGSISKTNTAAIFINQIREKIGVMFGNPETTPGGRALKFYASVMLDVRRIETLKQGTDMVGNRVK
VKVVKNKVAPPFRQAEFDIMFGKGISRSGSIIDIGVELGLVTKAGSWFTYGDQRIGQGRENAKQYMEEHADVMDEIERTI
RGDEKSAEILTVGAVGVDE

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=93838 D5261_RS06590 WP_119324333.1 1541320..1542339(+) (recA) [Capsulimonas corticalis strain AX-7]
TTGGATAAAGAAAAGGCGCTGGATATTGCATTGTCTCAACTGGAAAAGCAGTTTGGGAAGGGTTCGGTCATGCGACTGGG
CGAGTCGCCCAAGCAATCCGTCGAGGCCATCTCCACCGGATCGCTGGCGCTGGACCTGGCGCTCGGAGTCGGCGGCGTGC
CGCGCGGACGCATCACGGAGATTCATGGCGCGGAGTCCTCGGGCAAAACGACGATCGCTTACCACATCATCGCCGAAGCG
CAGAAGCTGGGCGGGACCGCCGCGTTTGTCGACGCCGAGCACTCGGTCGATCCGGAATACGCCCGCAACCTGGGCGTGGA
TATCAATAAGCTCCTGGTCTCCCAGCCCAACAACGGCGAGGAAGCCCTGGAGATCATGGACGCCCTGGTGCGCAGCGGCG
CCGTCGACGTGGTCGTTCTTGACTCCGTCGCCGCCCTCGTCCCCAAGGCCGAGATCGAAGGCGAAATGGGCGACAGCCAT
ATGGGCCTCCAGGCCCGTTTGATGTCGCAGGCGATGCGCAAGCTGAACGGCTCCATCTCCAAGACCAACACCGCCGCGAT
CTTCATCAATCAGATCCGCGAAAAGATCGGCGTCATGTTCGGCAATCCGGAGACCACCCCCGGCGGCCGCGCGCTGAAGT
TCTACGCCAGCGTCATGCTCGACGTCCGCCGTATCGAGACTCTGAAGCAGGGCACCGATATGGTCGGCAACCGGGTCAAG
GTGAAGGTCGTCAAGAACAAGGTCGCCCCGCCCTTCCGCCAGGCGGAGTTCGATATCATGTTCGGCAAGGGCATCTCGCG
CTCGGGCAGCATCATCGATATCGGCGTCGAGCTGGGCCTGGTCACCAAGGCCGGATCCTGGTTCACCTACGGCGATCAGC
GGATCGGCCAGGGACGAGAGAACGCCAAGCAGTACATGGAAGAGCATGCGGACGTGATGGACGAGATCGAACGAACCATT
CGCGGCGACGAGAAGTCCGCGGAGATCCTGACGGTCGGCGCGGTCGGCGTCGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A402D4A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.438

94.395

0.646
  recA Latilactobacillus sakei subsp. sakei 23K

66.562

94.395

0.628
  recA Acinetobacter baumannii D1279779

62.687

98.82

0.619
  recA Pseudomonas stutzeri DSM 10701

64.375

94.395

0.608
  recA Acinetobacter baylyi ADP1

63.75

94.395

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

94.69

0.602
  recA Lactococcus lactis subsp. cremoris KW2

62.654

95.575

0.599
  recA Streptococcus pyogenes NZ131

62.654

95.575

0.599
  recA Streptococcus pneumoniae Rx1

62.654

95.575

0.599
  recA Streptococcus pneumoniae D39

62.654

95.575

0.599
  recA Streptococcus pneumoniae R6

62.654

95.575

0.599
  recA Streptococcus pneumoniae TIGR4

62.654

95.575

0.599
  recA Neisseria gonorrhoeae MS11

62.617

94.69

0.593
  recA Helicobacter pylori strain NCTC11637

62.617

94.69

0.593
  recA Neisseria gonorrhoeae MS11

62.617

94.69

0.593
  recA Neisseria gonorrhoeae strain FA1090

62.617

94.69

0.593
  recA Streptococcus mitis SK321

62.037

95.575

0.593
  recA Streptococcus mitis NCTC 12261

62.037

95.575

0.593
  recA Helicobacter pylori 26695

62.305

94.69

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.975

93.215

0.587
  recA Ralstonia pseudosolanacearum GMI1000

64.61

90.855

0.587
  recA Glaesserella parasuis strain SC1401

62.382

94.1

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.562

94.395

0.581
  recA Vibrio cholerae strain A1552

61.562

94.395

0.581
  recA Streptococcus mutans UA159

60.494

95.575

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.816

96.165

0.575

Multiple sequence alignment