Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C80_RS07225 | Genome accession | NZ_CP145258 |
| Coordinates | 1522571..1523623 (-) | Length | 350 a.a. |
| NCBI ID | WP_002437037.1 | Uniprot ID | A0A4Q9WJI9 |
| Organism | Staphylococcus capitis subsp. urealyticus strain DSM 6717 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1521009..1595190 | 1522571..1523623 | within | 0 |
Gene organization within MGE regions
Location: 1521009..1595190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C80_RS07225 (V6C80_07220) | recA | 1522571..1523623 (-) | 1053 | WP_002437037.1 | recombinase RecA | Machinery gene |
| V6C80_RS07230 (V6C80_07225) | - | 1523792..1524940 (-) | 1149 | WP_047796210.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C80_RS07235 (V6C80_07230) | pgsA | 1525083..1525664 (-) | 582 | WP_002469863.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C80_RS07240 (V6C80_07235) | - | 1525692..1526084 (-) | 393 | WP_002436354.1 | RodZ family helix-turn-helix domain-containing protein | - |
| V6C80_RS07245 (V6C80_07240) | - | 1526103..1526930 (-) | 828 | WP_002436330.1 | YmfK family protein | - |
| V6C80_RS07250 (V6C80_07245) | - | 1527088..1527795 (-) | 708 | WP_047796209.1 | elongation factor P 5-aminopentanone reductase | - |
| V6C80_RS07255 (V6C80_07250) | - | 1527795..1529081 (-) | 1287 | WP_047796208.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| V6C80_RS07260 (V6C80_07255) | - | 1529081..1530355 (-) | 1275 | WP_080960919.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| V6C80_RS07265 (V6C80_07260) | - | 1530397..1531107 (-) | 711 | WP_103157050.1 | GntR family transcriptional regulator | - |
| V6C80_RS07270 (V6C80_07265) | - | 1531110..1533524 (-) | 2415 | WP_103157049.1 | DNA translocase FtsK | - |
| V6C80_RS07275 (V6C80_07270) | - | 1533782..1535455 (-) | 1674 | WP_002469869.1 | ribonuclease J2 | - |
| V6C80_RS07280 (V6C80_07275) | pnp | 1535689..1537788 (-) | 2100 | WP_047796205.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C80_RS07285 (V6C80_07280) | rpsO | 1538106..1538375 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C80_RS07290 (V6C80_07285) | ribF | 1538497..1539468 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C80_RS07295 (V6C80_07290) | truB | 1539484..1540401 (-) | 918 | WP_047796204.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C80_RS07300 (V6C80_07295) | rbfA | 1540550..1540900 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C80_RS07305 (V6C80_07300) | infB | 1541057..1543222 (-) | 2166 | WP_030064804.1 | translation initiation factor IF-2 | - |
| V6C80_RS07310 (V6C80_07305) | - | 1543227..1543544 (-) | 318 | WP_047796203.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| V6C80_RS07315 (V6C80_07310) | - | 1543541..1543825 (-) | 285 | WP_002436310.1 | RNase P modulator RnpM | - |
| V6C80_RS07320 (V6C80_07315) | nusA | 1543842..1545065 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C80_RS07325 (V6C80_07320) | rimP | 1545086..1545553 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C80_RS07330 (V6C80_07325) | - | 1545778..1550088 (-) | 4311 | WP_103157053.1 | PolC-type DNA polymerase III | - |
| V6C80_RS07335 (V6C80_07330) | - | 1550344..1552047 (-) | 1704 | WP_047796201.1 | proline--tRNA ligase | - |
| V6C80_RS07340 (V6C80_07335) | rseP | 1552067..1553353 (-) | 1287 | WP_047796200.1 | RIP metalloprotease RseP | - |
| V6C80_RS07345 (V6C80_07340) | - | 1553591..1554373 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6C80_RS07350 (V6C80_07345) | - | 1554377..1555147 (-) | 771 | WP_002436351.1 | isoprenyl transferase | - |
| V6C80_RS07355 (V6C80_07350) | frr | 1555428..1555982 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C80_RS07360 (V6C80_07355) | pyrH | 1555999..1556721 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C80_RS07365 (V6C80_07360) | tsf | 1556858..1557736 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6C80_RS07370 (V6C80_07365) | rpsB | 1557887..1558675 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C80_RS07375 (V6C80_07370) | codY | 1558929..1559702 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C80_RS07380 (V6C80_07375) | hslU | 1559725..1561128 (-) | 1404 | WP_058121653.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C80_RS07385 (V6C80_07380) | hslV | 1561212..1561754 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C80_RS07390 (V6C80_07385) | xerC | 1561758..1562648 (-) | 891 | WP_047796198.1 | tyrosine recombinase XerC | - |
| V6C80_RS07395 (V6C80_07390) | trmFO | 1562885..1564192 (-) | 1308 | WP_030064791.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C80_RS07400 (V6C80_07395) | topA | 1564218..1566293 (-) | 2076 | WP_186306228.1 | type I DNA topoisomerase | - |
| V6C80_RS07405 (V6C80_07400) | dprA | 1566471..1567343 (-) | 873 | WP_047796196.1 | DNA-processing protein DprA | Machinery gene |
| V6C80_RS07410 (V6C80_07405) | sucD | 1567569..1568477 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C80_RS07415 (V6C80_07410) | sucC | 1568499..1569665 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C80_RS07420 (V6C80_07415) | - | 1569773..1570543 (-) | 771 | WP_047796195.1 | ribonuclease HII | - |
| V6C80_RS07425 (V6C80_07420) | ylqF | 1570527..1571410 (-) | 884 | Protein_1424 | ribosome biogenesis GTPase YlqF | - |
| V6C80_RS07430 (V6C80_07425) | - | 1571690..1574290 (+) | 2601 | WP_047796194.1 | YfhO family protein | - |
| V6C80_RS07435 (V6C80_07430) | - | 1574283..1576889 (+) | 2607 | WP_047796193.1 | YfhO family protein | - |
| V6C80_RS07440 (V6C80_07435) | - | 1577614..1577952 (+) | 339 | WP_037548826.1 | hypothetical protein | - |
| V6C80_RS07445 (V6C80_07440) | rplS | 1578529..1578879 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C80_RS07450 (V6C80_07445) | trmD | 1578985..1579722 (-) | 738 | WP_047796192.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C80_RS07455 (V6C80_07450) | rimM | 1579722..1580225 (-) | 504 | WP_030064768.1 | ribosome maturation factor RimM | - |
| V6C80_RS07460 (V6C80_07455) | rpsP | 1580488..1580763 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C80_RS07465 (V6C80_07460) | ffh | 1581378..1582745 (-) | 1368 | WP_047796191.1 | signal recognition particle protein | - |
| V6C80_RS07470 (V6C80_07465) | - | 1582775..1583107 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C80_RS07475 (V6C80_07470) | ftsY | 1583094..1584353 (-) | 1260 | WP_002435227.1 | signal recognition particle-docking protein FtsY | - |
| V6C80_RS07480 (V6C80_07475) | smc | 1584350..1587919 (-) | 3570 | WP_103157071.1 | chromosome segregation protein SMC | - |
| V6C80_RS07485 (V6C80_07480) | rnc | 1588046..1588783 (-) | 738 | WP_002435159.1 | ribonuclease III | - |
| V6C80_RS07490 (V6C80_07485) | - | 1588900..1589133 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| V6C80_RS07495 (V6C80_07490) | fabG | 1589587..1590321 (-) | 735 | WP_002435264.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| V6C80_RS07500 (V6C80_07495) | fabD | 1590314..1591240 (-) | 927 | WP_002435219.1 | ACP S-malonyltransferase | - |
| V6C80_RS07505 (V6C80_07500) | plsX | 1591233..1592219 (-) | 987 | WP_002435190.1 | phosphate acyltransferase PlsX | - |
| V6C80_RS07510 (V6C80_07505) | fapR | 1592212..1592781 (-) | 570 | WP_047796189.1 | transcription factor FapR | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37971.88 Da Isoelectric Point: 4.9318
>NTDB_id=938351 V6C80_RS07225 WP_002437037.1 1522571..1523623(-) (recA) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=938351 V6C80_RS07225 WP_002437037.1 1522571..1523623(-) (recA) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.