Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C47_RS07265 | Genome accession | NZ_CP145248 |
| Coordinates | 1508494..1509546 (-) | Length | 350 a.a. |
| NCBI ID | WP_367120759.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1365669 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1506933..1570623 | 1508494..1509546 | within | 0 |
Gene organization within MGE regions
Location: 1506933..1570623
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C47_RS07265 (V6C47_07280) | recA | 1508494..1509546 (-) | 1053 | WP_367120759.1 | recombinase RecA | Machinery gene |
| V6C47_RS07270 (V6C47_07285) | - | 1509715..1510863 (-) | 1149 | WP_367120760.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C47_RS07275 (V6C47_07290) | pgsA | 1511007..1511588 (-) | 582 | WP_002469863.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C47_RS07280 (V6C47_07295) | - | 1511616..1512008 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6C47_RS07285 (V6C47_07300) | - | 1512027..1512854 (-) | 828 | WP_367120761.1 | YmfK family protein | - |
| V6C47_RS07290 (V6C47_07305) | ymfI | 1513012..1513719 (-) | 708 | WP_367120762.1 | elongation factor P 5-aminopentanone reductase | - |
| V6C47_RS07295 (V6C47_07310) | yfmH | 1513719..1515005 (-) | 1287 | WP_030064811.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| V6C47_RS07300 (V6C47_07315) | yfmF | 1515005..1516279 (-) | 1275 | WP_367120763.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| V6C47_RS07305 (V6C47_07320) | - | 1516321..1517031 (-) | 711 | WP_367120764.1 | GntR family transcriptional regulator | - |
| V6C47_RS07310 (V6C47_11545) | - | 1517034..1518497 (-) | 1464 | Protein_1402 | DNA translocase FtsK | - |
| V6C47_RS07315 (V6C47_11550) | - | 1518593..1519448 (-) | 856 | Protein_1403 | DNA translocase FtsK 4TM domain-containing protein | - |
| V6C47_RS07320 (V6C47_07330) | rnjB | 1519708..1521381 (-) | 1674 | WP_367120766.1 | ribonuclease J2 | - |
| V6C47_RS07325 (V6C47_07335) | pnp | 1521614..1523713 (-) | 2100 | WP_367120767.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C47_RS07330 (V6C47_07340) | rpsO | 1524031..1524300 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C47_RS07335 (V6C47_07345) | ribF | 1524422..1525393 (-) | 972 | WP_367120768.1 | riboflavin biosynthesis protein RibF | - |
| V6C47_RS07340 (V6C47_07350) | truB | 1525409..1526326 (-) | 918 | WP_367120769.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C47_RS07345 (V6C47_07355) | rbfA | 1526475..1526825 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C47_RS07350 (V6C47_07360) | infB | 1526982..1529156 (-) | 2175 | WP_107362249.1 | translation initiation factor IF-2 | - |
| V6C47_RS07355 (V6C47_07365) | - | 1529161..1529478 (-) | 318 | WP_367120770.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| V6C47_RS07360 (V6C47_07370) | rnpM | 1529475..1529759 (-) | 285 | WP_002436310.1 | RNase P modulator RnpM | - |
| V6C47_RS07365 (V6C47_07375) | nusA | 1529776..1530999 (-) | 1224 | WP_367120771.1 | transcription termination factor NusA | - |
| V6C47_RS07370 (V6C47_07380) | rimP | 1531020..1531487 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C47_RS07375 (V6C47_07385) | - | 1531712..1536022 (-) | 4311 | WP_367121888.1 | PolC-type DNA polymerase III | - |
| V6C47_RS07380 (V6C47_07390) | - | 1536278..1537981 (-) | 1704 | WP_367120772.1 | proline--tRNA ligase | - |
| V6C47_RS07385 (V6C47_07395) | rseP | 1538001..1539287 (-) | 1287 | WP_367120773.1 | RIP metalloprotease RseP | - |
| V6C47_RS07390 (V6C47_07400) | - | 1539527..1540309 (-) | 783 | WP_367120774.1 | phosphatidate cytidylyltransferase | - |
| V6C47_RS07395 (V6C47_07405) | - | 1540313..1541083 (-) | 771 | WP_367120775.1 | isoprenyl transferase | - |
| V6C47_RS07400 (V6C47_07410) | frr | 1541364..1541918 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C47_RS07405 (V6C47_07415) | pyrH | 1541935..1542657 (-) | 723 | WP_367120776.1 | UMP kinase | - |
| V6C47_RS07410 (V6C47_07420) | tsf | 1542794..1543672 (-) | 879 | WP_367120777.1 | translation elongation factor Ts | - |
| V6C47_RS07415 (V6C47_07425) | rpsB | 1543823..1544611 (-) | 789 | WP_367120778.1 | 30S ribosomal protein S2 | - |
| V6C47_RS07420 (V6C47_07430) | codY | 1544865..1545638 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C47_RS07425 (V6C47_07435) | hslU | 1545661..1547064 (-) | 1404 | WP_367120779.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C47_RS07430 (V6C47_07440) | hslV | 1547148..1547690 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C47_RS07435 (V6C47_07445) | xerC | 1547694..1548584 (-) | 891 | WP_367120780.1 | tyrosine recombinase XerC | - |
| V6C47_RS07440 (V6C47_07450) | trmFO | 1548821..1550128 (-) | 1308 | WP_367120781.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C47_RS07445 (V6C47_07455) | topA | 1550154..1552229 (-) | 2076 | WP_367121889.1 | type I DNA topoisomerase | - |
| V6C47_RS07450 (V6C47_07460) | dprA | 1552407..1553279 (-) | 873 | WP_367120782.1 | DNA-processing protein DprA | Machinery gene |
| V6C47_RS07455 (V6C47_07465) | sucD | 1553505..1554413 (-) | 909 | WP_367120783.1 | succinate--CoA ligase subunit alpha | - |
| V6C47_RS07460 (V6C47_07470) | sucC | 1554435..1555601 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C47_RS07465 (V6C47_07475) | - | 1555709..1556479 (-) | 771 | WP_367120784.1 | ribonuclease HII | - |
| V6C47_RS07470 (V6C47_07480) | ylqF | 1556463..1557346 (-) | 884 | Protein_1434 | ribosome biogenesis GTPase YlqF | - |
| V6C47_RS07475 (V6C47_07485) | - | 1557626..1560225 (+) | 2600 | Protein_1435 | YfhO family protein | - |
| V6C47_RS07480 (V6C47_07490) | - | 1560218..1562824 (+) | 2607 | WP_367120785.1 | YfhO family protein | - |
| V6C47_RS07485 (V6C47_07495) | - | 1563304..1563888 (+) | 585 | WP_367120786.1 | hypothetical protein | - |
| V6C47_RS07490 (V6C47_07500) | rplS | 1564465..1564815 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C47_RS07495 (V6C47_07505) | trmD | 1564921..1565658 (-) | 738 | WP_367120787.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C47_RS07500 (V6C47_07510) | rimM | 1565658..1566161 (-) | 504 | WP_367120788.1 | ribosome maturation factor RimM | - |
| V6C47_RS07505 (V6C47_07515) | rpsP | 1566424..1566699 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C47_RS07510 (V6C47_07520) | ffh | 1567123..1568490 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6C47_RS07515 (V6C47_07525) | - | 1568520..1568852 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C47_RS07520 (V6C47_07530) | ftsY | 1568839..1570098 (-) | 1260 | WP_367120789.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37967.94 Da Isoelectric Point: 5.0065
>NTDB_id=938178 V6C47_RS07265 WP_367120759.1 1508494..1509546(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKVNVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDPEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKVNVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDPEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=938178 V6C47_RS07265 WP_367120759.1 1508494..1509546(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1365669]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACCTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCAGAAGCATTTGTACGAA
GTGGTGCAGTTGACATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
ATCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGTAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACCCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACACGCACTTGATCCTGTGTACGCTCAAGCTTTAGG
CGTAGATATTGACAACCTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCAGAAGCATTTGTACGAA
GTGGTGCAGTTGACATTGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAACCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
ATCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAACGACATCGTTGATAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGTAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACCCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.