Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ANSO36C_RS03145 Genome accession   NZ_AP025732
Coordinates   705748..706824 (-) Length   358 a.a.
NCBI ID   WP_190941021.1    Uniprot ID   -
Organism   Nostoc cf. commune SO-36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 700748..711824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANSO36C_RS03130 (ANSO36C_06230) - 701664..702394 (-) 731 Protein_634 response regulator transcription factor -
  ANSO36C_RS03135 (ANSO36C_06240) - 703022..703648 (+) 627 WP_251958344.1 CPP1-like family protein -
  ANSO36C_RS03140 (ANSO36C_06250) - 703804..705424 (-) 1621 Protein_636 tetratricopeptide repeat protein -
  ANSO36C_RS03145 (ANSO36C_06270) recA 705748..706824 (-) 1077 WP_190941021.1 recombinase RecA Machinery gene
  ANSO36C_RS03150 (ANSO36C_06280) - 707329..707598 (+) 270 WP_251958345.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ANSO36C_RS03155 (ANSO36C_06290) - 707585..707866 (+) 282 WP_251958346.1 type II toxin-antitoxin system RelE family toxin -
  ANSO36C_RS03160 (ANSO36C_06300) xseA 707927..709195 (+) 1269 WP_251960238.1 exodeoxyribonuclease VII large subunit -
  ANSO36C_RS03165 (ANSO36C_06310) xseB 709188..709415 (+) 228 WP_251958347.1 exodeoxyribonuclease VII small subunit -
  ANSO36C_RS03170 (ANSO36C_06320) - 709599..710291 (-) 693 WP_251958348.1 HAD family hydrolase -
  ANSO36C_RS03175 (ANSO36C_06330) hppD 710342..711397 (-) 1056 WP_251958349.1 4-hydroxyphenylpyruvate dioxygenase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38340.75 Da        Isoelectric Point: 5.0617

>NTDB_id=93813 ANSO36C_RS03145 WP_190941021.1 705748..706824(-) (recA) [Nostoc cf. commune SO-36]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGIAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDIHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCIVDLAEETGVLVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
QIKQLVREKLDKGAVVSANSVAKASEGDEEEVDLEPEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=93813 ANSO36C_RS03145 WP_190941021.1 705748..706824(-) (recA) [Nostoc cf. commune SO-36]
ATGGCTATCAACACCGATACTTCAGGTAAGCAAAAAGCACTGACTATGGTGCTCAACCAGATTGAGCGCAGCTTTGGTAA
AGGAGCAATCATGCGCCTGGGTGATGCTACCCGGATGCGGGTGGAGACAATTTCTAGTGGGGCGCTCACCCTGGATTTAG
CATTAGGTGGTGGTTTACCCAAGGGGCGGGTAATTGAGATTTATGGGCCGGAAAGTTCCGGGAAGACTACAGTAGCGCTA
CATGCGCTCGCTGAAGTGCAAAGAAATGGTGGTATTGCTGCCTTTGTTGATGCTGAACACGCGCTAGACCCTACTTATGC
TGCGGCATTGGGTGTAGATATTGACAATTTGCTGATTTCCCAACCAGACACTGGCGAATCAGCTTTGGAAATTGTCGATC
AGCTGGTTCGCTCTGCTGCGGTTGATATTGTAGTCATTGACTCAGTAGCAGCACTGGTTCCCCGCGCTGAAATTGAAGGC
GACATGGGTGATATTCACGTTGGTTTGCAGGCGCGGTTGATGAGCCAAGCCCTACGTAAGATTACGGGCAATATTGGTAA
ATCTGGTTGTACAGTAATTTTCATCAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGTCCAGAAACCACAACTG
GAGGTAACGCATTGAAGTTTTACGCTTCGGTGCGCTTGGATATTCGCCGGATTCAAACCTTGAAAAAAGGTACAGATGAA
TTTGGTAATCGCGTCAAAGTTAAAGTTGCTAAAAATAAAGTAGCTCCGCCTTTTAGAATTGCGGAATTTGACATTATTTT
TGGCAAAGGAATTTCTACCTTGGGTTGTATTGTAGACTTGGCAGAAGAAACTGGCGTACTTGTCCGCAAAGGAGCTTGGT
ACAGCTATAATGGCGATAATATCTCCCAAGGACGAGACAACGCCATTAAGTATCTCGAAGAAAAACCTGAGTTTGCTGAA
CAAATTAAACAACTGGTGCGTGAAAAGCTAGATAAAGGCGCTGTTGTTTCTGCTAACTCTGTAGCTAAAGCCAGTGAAGG
AGACGAAGAAGAAGTCGATTTAGAGCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.006

96.648

0.609
  recA Pseudomonas stutzeri DSM 10701

63.006

96.648

0.609
  recA Acinetobacter baylyi ADP1

63.006

96.648

0.609
  recA Neisseria gonorrhoeae MS11

60.34

98.603

0.595
  recA Neisseria gonorrhoeae strain FA1090

60.34

98.603

0.595
  recA Neisseria gonorrhoeae MS11

60.34

98.603

0.595
  recA Ralstonia pseudosolanacearum GMI1000

64.923

90.782

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.737

0.584
  recA Glaesserella parasuis strain SC1401

59.195

97.207

0.575
  recA Streptococcus mitis NCTC 12261

55.89

100

0.57
  recA Helicobacter pylori strain NCTC11637

61.145

92.737

0.567
  recA Helicobacter pylori 26695

61.145

92.737

0.567
  recA Streptococcus mutans UA159

58.213

96.927

0.564
  recA Vibrio cholerae strain A1552

61.801

89.944

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.801

89.944

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.558

96.089

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

61.129

89.106

0.545
  recA Streptococcus pneumoniae Rx1

59.816

91.061

0.545
  recA Streptococcus pneumoniae D39

59.816

91.061

0.545
  recA Streptococcus pneumoniae R6

59.816

91.061

0.545
  recA Streptococcus pneumoniae TIGR4

59.816

91.061

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.451

91.62

0.545
  recA Streptococcus pyogenes NZ131

59.509

91.061

0.542
  recA Streptococcus mitis SK321

59.752

90.223

0.539
  recA Lactococcus lactis subsp. cremoris KW2

58.824

90.223

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

90.503

0.52

Multiple sequence alignment