Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6C49_RS07310 Genome accession   NZ_CP145241
Coordinates   1478780..1479832 (-) Length   350 a.a.
NCBI ID   WP_049390989.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain Sc1365673     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1473780..1484832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C49_RS07295 (V6C49_07285) - 1475607..1476401 (-) 795 WP_002453118.1 TIGR00282 family metallophosphoesterase -
  V6C49_RS07300 (V6C49_07290) - 1476564..1476779 (+) 216 WP_002453117.1 hypothetical protein -
  V6C49_RS07305 (V6C49_07295) rny 1476986..1478545 (-) 1560 WP_367141588.1 ribonuclease Y -
  V6C49_RS07310 (V6C49_07300) recA 1478780..1479832 (-) 1053 WP_049390989.1 recombinase RecA Machinery gene
  V6C49_RS07315 (V6C49_07305) - 1480001..1481149 (-) 1149 WP_002453114.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  V6C49_RS07320 (V6C49_07310) pgsA 1481291..1481872 (-) 582 WP_002453113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6C49_RS07325 (V6C49_07315) - 1481900..1482292 (-) 393 WP_016898116.1 helix-turn-helix domain-containing protein -
  V6C49_RS07330 (V6C49_07320) - 1482311..1483138 (-) 828 WP_016898115.1 YmfK family protein -
  V6C49_RS07335 (V6C49_07325) - 1483320..1484027 (-) 708 WP_002453110.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38001.91 Da        Isoelectric Point: 4.9318

>NTDB_id=938111 V6C49_RS07310 WP_049390989.1 1478780..1479832(-) (recA) [Staphylococcus capitis subsp. capitis strain Sc1365673]
MDNERQKALDTVIKNMEKSFGKGTVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=938111 V6C49_RS07310 WP_049390989.1 1478780..1479832(-) (recA) [Staphylococcus capitis subsp. capitis strain Sc1365673]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTACGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.143

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

93.714

0.669
  recA Streptococcus pneumoniae TIGR4

64.011

100

0.666
  recA Streptococcus pneumoniae Rx1

64.011

100

0.666
  recA Streptococcus pneumoniae D39

64.011

100

0.666
  recA Streptococcus pneumoniae R6

64.011

100

0.666
  recA Streptococcus mitis NCTC 12261

64.489

100

0.649
  recA Streptococcus mutans UA159

63.408

100

0.649
  recA Streptococcus pyogenes NZ131

68.693

94

0.646
  recA Acinetobacter baumannii D1279779

64

100

0.64
  recA Acinetobacter baylyi ADP1

63.977

99.143

0.634
  recA Streptococcus mitis SK321

66.366

95.143

0.631
  recA Neisseria gonorrhoeae MS11

63.953

98.286

0.629
  recA Neisseria gonorrhoeae MS11

63.953

98.286

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.953

98.286

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.571

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

94

0.62
  recA Helicobacter pylori 26695

64.939

93.714

0.609
  recA Vibrio cholerae strain A1552

65.031

93.143

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.143

0.606
  recA Helicobacter pylori strain NCTC11637

64.634

93.714

0.606
  recA Pseudomonas stutzeri DSM 10701

59.531

97.429

0.58
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.429

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

94.571

0.577
  recA Glaesserella parasuis strain SC1401

57.714

100

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.442

91.143

0.56