Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACET1J_RS27460 Genome accession   NZ_CP168998
Coordinates   5427552..5428544 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain UTAK-14     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5422552..5433544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1J_RS27450 (ACET1J_27450) yieP 5425444..5426136 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  ACET1J_RS27455 (ACET1J_27455) mdtD 5426159..5427586 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  ACET1J_RS27460 (ACET1J_27460) cytR 5427552..5428544 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACET1J_RS27465 (ACET1J_27465) rbsK 5428548..5429477 (-) 930 WP_001435128.1 ribokinase -
  ACET1J_RS27470 (ACET1J_27470) rbsB 5429603..5430493 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACET1J_RS27475 (ACET1J_27475) rbsC 5430518..5431483 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACET1J_RS27480 (ACET1J_27480) rbsA 5431488..5432994 (-) 1507 Protein_5375 ribose ABC transporter ATP-binding protein RbsA -
  ACET1J_RS27485 (ACET1J_27485) rbsD 5433002..5433422 (-) 421 Protein_5376 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=937800 ACET1J_RS27460 WP_000224470.1 5427552..5428544(-) (cytR) [Escherichia coli strain UTAK-14]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=937800 ACET1J_RS27460 WP_000224470.1 5427552..5428544(-) (cytR) [Escherichia coli strain UTAK-14]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364