Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LmYK1_RS04130 Genome accession   NZ_AP025728
Coordinates   870292..871398 (+) Length   368 a.a.
NCBI ID   WP_004048185.1    Uniprot ID   A0A0R2BGW3
Organism   Ligilactobacillus murinus strain YK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 865292..876398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LmYK1_RS04110 (LmYK1_08230) - 866381..867688 (+) 1308 WP_004048192.1 pitrilysin family protein -
  LmYK1_RS04115 (LmYK1_08240) - 867685..868413 (+) 729 WP_004048191.1 SDR family oxidoreductase -
  LmYK1_RS04120 (LmYK1_08250) - 868453..869379 (+) 927 WP_286295321.1 RodZ domain-containing protein -
  LmYK1_RS04125 (LmYK1_08260) pgsA 869487..870074 (+) 588 WP_004048187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LmYK1_RS04130 (LmYK1_08270) recA 870292..871398 (+) 1107 WP_004048185.1 recombinase RecA Machinery gene
  LmYK1_RS04135 (LmYK1_08280) rny 871586..873127 (+) 1542 WP_286011505.1 ribonuclease Y -
  LmYK1_RS04140 (LmYK1_08290) - 873185..873913 (-) 729 WP_286295322.1 deoxynucleoside kinase -
  LmYK1_RS04145 (LmYK1_08300) - 874091..876115 (+) 2025 WP_135057523.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39531.23 Da        Isoelectric Point: 6.7625

>NTDB_id=93780 LmYK1_RS04130 WP_004048185.1 870292..871398(+) (recA) [Ligilactobacillus murinus strain YK1]
MADERQVALDKALKKIEKDFGKGAIMKMGEKADTQISTVPSGSLALDEALGVGGFPRGRIVEIYGPESSGKTTVALQAVA
EVQKQGGLAAYIDAENALDPAYATALGVNIDDLLLSQPGTGEEGLQIADALVSSGAVDIVVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSDVLGNR
TRIKVVKNKVAPPFRTAEVDIMYGEGISKMGELIDLAVEKDIIEKSGSWFSYGGNHIGQGREKTKAYLSEHPEVADEITQ
KVRDTPTLTQKEKKALEKEKKAKEKEAAKADKKTANKPVSLDLGKDEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=93780 LmYK1_RS04130 WP_004048185.1 870292..871398(+) (recA) [Ligilactobacillus murinus strain YK1]
TTGGCTGACGAAAGACAAGTTGCTTTAGACAAAGCGCTCAAGAAGATCGAAAAAGATTTCGGTAAAGGTGCCATCATGAA
GATGGGTGAAAAGGCTGATACCCAGATCTCAACTGTTCCAAGTGGTTCATTGGCCCTTGATGAAGCTTTGGGAGTAGGTG
GTTTCCCAAGGGGACGTATCGTGGAGATCTATGGGCCTGAAAGTTCTGGTAAGACCACCGTTGCCTTGCAAGCGGTAGCT
GAAGTTCAAAAACAAGGCGGTCTAGCAGCCTATATCGATGCGGAAAATGCGCTTGATCCTGCATATGCGACAGCTTTGGG
CGTAAATATCGACGACTTGTTGCTCTCTCAACCCGGTACTGGTGAAGAAGGTCTACAGATCGCAGATGCCTTGGTCTCTT
CTGGTGCGGTAGATATCGTGGTCATTGACTCCGTAGCGGCTTTAGTTCCTAAAGCTGAGATCGAAGGTGAGATGGGCGAC
TCACATGTTGGTTTACAAGCGCGTTTGATGTCTCAAGCTTTGCGTAAACTTTCAGGTACGATCAACAAGACTAAGACGAT
CGCTTTGTTTATCAATCAGATCCGTGAAAAAGTTGGGGTGATGTTTGGTAATCCGGAAACGACCCCTGGTGGACGGGCCC
TTAAGTTTTACTCAACGATCCGCTTGGAAGTTCGGCGTGCTGAACAGATCAAGGATGGTTCCGATGTCTTAGGTAACCGG
ACTCGGATCAAAGTTGTGAAAAACAAGGTCGCACCACCATTTAGAACGGCAGAAGTTGATATCATGTATGGCGAAGGGAT
CTCGAAGATGGGTGAATTGATCGACTTAGCAGTTGAAAAAGATATCATCGAAAAGAGTGGTTCATGGTTCTCATACGGTG
GTAATCATATTGGTCAAGGTCGTGAAAAGACAAAGGCTTACTTGAGTGAACATCCTGAAGTGGCCGATGAGATCACCCAA
AAAGTTCGTGATACACCAACGCTCACACAAAAAGAGAAAAAAGCACTTGAAAAAGAAAAAAAAGCTAAGGAAAAAGAAGC
GGCTAAAGCTGATAAAAAGACAGCTAATAAGCCGGTCAGTTTAGACTTAGGCAAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2BGW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.112

87.228

0.734
  recA Bacillus subtilis subsp. subtilis str. 168

76.852

88.043

0.677
  recA Streptococcus pneumoniae Rx1

64.658

99.185

0.641
  recA Streptococcus pneumoniae D39

64.658

99.185

0.641
  recA Streptococcus mitis NCTC 12261

64.658

99.185

0.641
  recA Streptococcus pneumoniae R6

64.658

99.185

0.641
  recA Streptococcus pneumoniae TIGR4

64.658

99.185

0.641
  recA Streptococcus mitis SK321

64.384

99.185

0.639
  recA Streptococcus mutans UA159

64.986

97.011

0.63
  recA Lactococcus lactis subsp. cremoris KW2

70.679

88.043

0.622
  recA Streptococcus pyogenes NZ131

69.419

88.859

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.123

88.043

0.573
  recA Neisseria gonorrhoeae MS11

65.123

88.043

0.573
  recA Neisseria gonorrhoeae MS11

65.123

88.043

0.573
  recA Ralstonia pseudosolanacearum GMI1000

64.968

85.326

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

89.13

0.538
  recA Glaesserella parasuis strain SC1401

60.991

87.772

0.535
  recA Pseudomonas stutzeri DSM 10701

58.806

91.033

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.509

88.587

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.248

87.5

0.527
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.568

88.043

0.524
  recA Vibrio cholerae strain A1552

59.568

88.043

0.524
  recA Acinetobacter baylyi ADP1

58.951

88.043

0.519
  recA Acinetobacter baumannii D1279779

58.025

88.043

0.511
  recA Helicobacter pylori 26695

57.407

88.043

0.505
  recA Helicobacter pylori strain NCTC11637

57.407

88.043

0.505

Multiple sequence alignment