Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | V6C61_RS07450 | Genome accession | NZ_CP145198 |
| Coordinates | 1563317..1564369 (-) | Length | 350 a.a. |
| NCBI ID | WP_023350375.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis subsp. urealyticus strain Sc1516945 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1561756..1625272 | 1563317..1564369 | within | 0 |
Gene organization within MGE regions
Location: 1561756..1625272
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C61_RS07450 (V6C61_07430) | recA | 1563317..1564369 (-) | 1053 | WP_023350375.1 | recombinase RecA | Machinery gene |
| V6C61_RS07455 (V6C61_07435) | - | 1564538..1565686 (-) | 1149 | WP_023350376.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| V6C61_RS07460 (V6C61_07440) | pgsA | 1565829..1566410 (-) | 582 | WP_023350377.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| V6C61_RS07465 (V6C61_07445) | - | 1566438..1566830 (-) | 393 | WP_002436354.1 | helix-turn-helix domain-containing protein | - |
| V6C61_RS07470 (V6C61_07450) | - | 1566849..1567676 (-) | 828 | WP_367019687.1 | YmfK family protein | - |
| V6C61_RS07475 (V6C61_07455) | ymfI | 1567835..1568542 (-) | 708 | WP_023350378.1 | elongation factor P 5-aminopentanone reductase | - |
| V6C61_RS07480 (V6C61_07460) | yfmH | 1568542..1569828 (-) | 1287 | WP_367019688.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| V6C61_RS07485 (V6C61_07465) | yfmF | 1569828..1571102 (-) | 1275 | WP_023350380.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| V6C61_RS07490 (V6C61_07470) | - | 1571144..1571854 (-) | 711 | WP_023350381.1 | GntR family transcriptional regulator | - |
| V6C61_RS07495 (V6C61_12190) | - | 1571857..1573317 (-) | 1461 | Protein_1438 | DNA translocase FtsK | - |
| V6C61_RS07500 (V6C61_12195) | - | 1573417..1574277 (-) | 861 | Protein_1439 | DNA translocase FtsK 4TM domain-containing protein | - |
| V6C61_RS07505 (V6C61_07480) | rnjB | 1574535..1576208 (-) | 1674 | WP_002469869.1 | ribonuclease J2 | - |
| V6C61_RS07510 (V6C61_07485) | pnp | 1576442..1578541 (-) | 2100 | WP_145350199.1 | polyribonucleotide nucleotidyltransferase | - |
| V6C61_RS07515 (V6C61_07490) | rpsO | 1578675..1578944 (-) | 270 | WP_002436359.1 | 30S ribosomal protein S15 | - |
| V6C61_RS07520 (V6C61_07495) | ribF | 1579066..1580037 (-) | 972 | WP_002436322.1 | riboflavin biosynthesis protein RibF | - |
| V6C61_RS07525 (V6C61_07500) | truB | 1580053..1580970 (-) | 918 | WP_023350385.1 | tRNA pseudouridine(55) synthase TruB | - |
| V6C61_RS07530 (V6C61_07505) | rbfA | 1581119..1581469 (-) | 351 | WP_002436301.1 | 30S ribosome-binding factor RbfA | - |
| V6C61_RS07535 (V6C61_07510) | infB | 1581626..1583800 (-) | 2175 | WP_023350386.1 | translation initiation factor IF-2 | - |
| V6C61_RS07540 (V6C61_07515) | - | 1583805..1584122 (-) | 318 | WP_002436350.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| V6C61_RS07545 (V6C61_07520) | rnpM | 1584119..1584403 (-) | 285 | WP_002436310.1 | RNase P modulator RnpM | - |
| V6C61_RS07550 (V6C61_07525) | nusA | 1584420..1585643 (-) | 1224 | WP_002436342.1 | transcription termination factor NusA | - |
| V6C61_RS07555 (V6C61_07530) | rimP | 1585664..1586131 (-) | 468 | WP_002436317.1 | ribosome maturation factor RimP | - |
| V6C61_RS07560 (V6C61_07535) | - | 1586356..1590666 (-) | 4311 | WP_087671603.1 | PolC-type DNA polymerase III | - |
| V6C61_RS07565 (V6C61_07540) | - | 1590922..1592625 (-) | 1704 | WP_049326556.1 | proline--tRNA ligase | - |
| V6C61_RS07570 (V6C61_07545) | rseP | 1592645..1593931 (-) | 1287 | WP_023350389.1 | RIP metalloprotease RseP | - |
| V6C61_RS07575 (V6C61_07550) | - | 1594171..1594953 (-) | 783 | WP_002436308.1 | phosphatidate cytidylyltransferase | - |
| V6C61_RS07580 (V6C61_07555) | - | 1594957..1595727 (-) | 771 | WP_023350390.1 | isoprenyl transferase | - |
| V6C61_RS07585 (V6C61_07560) | frr | 1596008..1596562 (-) | 555 | WP_002436295.1 | ribosome recycling factor | - |
| V6C61_RS07590 (V6C61_07565) | pyrH | 1596579..1597301 (-) | 723 | WP_002436299.1 | UMP kinase | - |
| V6C61_RS07595 (V6C61_07570) | tsf | 1597438..1598316 (-) | 879 | WP_030064793.1 | translation elongation factor Ts | - |
| V6C61_RS07600 (V6C61_07575) | rpsB | 1598467..1599255 (-) | 789 | WP_002436327.1 | 30S ribosomal protein S2 | - |
| V6C61_RS07605 (V6C61_07580) | codY | 1599509..1600282 (-) | 774 | WP_002436324.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| V6C61_RS07610 (V6C61_07585) | hslU | 1600305..1601708 (-) | 1404 | WP_023350392.1 | ATP-dependent protease ATPase subunit HslU | - |
| V6C61_RS07615 (V6C61_07590) | hslV | 1601792..1602334 (-) | 543 | WP_023350393.1 | ATP-dependent protease subunit HslV | - |
| V6C61_RS07620 (V6C61_07595) | xerC | 1602338..1603228 (-) | 891 | WP_023350394.1 | tyrosine recombinase XerC | - |
| V6C61_RS07625 (V6C61_07600) | trmFO | 1603465..1604772 (-) | 1308 | WP_023350395.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| V6C61_RS07630 (V6C61_07605) | topA | 1604798..1606873 (-) | 2076 | WP_030064789.1 | type I DNA topoisomerase | - |
| V6C61_RS07635 (V6C61_07610) | dprA | 1607051..1607923 (-) | 873 | WP_023350397.1 | DNA-processing protein DprA | Machinery gene |
| V6C61_RS07640 (V6C61_07615) | sucD | 1608149..1609057 (-) | 909 | WP_002436344.1 | succinate--CoA ligase subunit alpha | - |
| V6C61_RS07645 (V6C61_07620) | sucC | 1609079..1610245 (-) | 1167 | WP_002436291.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| V6C61_RS07650 (V6C61_07625) | - | 1610353..1611123 (-) | 771 | WP_023350398.1 | ribonuclease HII | - |
| V6C61_RS07655 (V6C61_07630) | ylqF | 1611107..1611990 (-) | 884 | Protein_1470 | ribosome biogenesis GTPase YlqF | - |
| V6C61_RS07660 (V6C61_07635) | - | 1612270..1614870 (+) | 2601 | WP_023350400.1 | YfhO family protein | - |
| V6C61_RS07665 (V6C61_07640) | - | 1614863..1617469 (+) | 2607 | WP_367019689.1 | YfhO family protein | - |
| V6C61_RS07670 (V6C61_07645) | - | 1617949..1618155 (+) | 207 | WP_226859621.1 | hypothetical protein | - |
| V6C61_RS07675 (V6C61_07650) | - | 1618195..1618533 (+) | 339 | WP_023350404.1 | hypothetical protein | - |
| V6C61_RS07680 (V6C61_07655) | rplS | 1619110..1619460 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| V6C61_RS07685 (V6C61_07660) | trmD | 1619566..1620303 (-) | 738 | WP_023350405.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| V6C61_RS07690 (V6C61_07665) | rimM | 1620303..1620806 (-) | 504 | WP_023350406.1 | ribosome maturation factor RimM | - |
| V6C61_RS07695 (V6C61_07670) | rpsP | 1621069..1621344 (-) | 276 | WP_002453071.1 | 30S ribosomal protein S16 | - |
| V6C61_RS07700 (V6C61_07675) | ffh | 1621772..1623139 (-) | 1368 | WP_002435148.1 | signal recognition particle protein | - |
| V6C61_RS07705 (V6C61_07680) | - | 1623169..1623501 (-) | 333 | WP_002435170.1 | putative DNA-binding protein | - |
| V6C61_RS07710 (V6C61_07685) | ftsY | 1623488..1624747 (-) | 1260 | WP_023350407.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37913.85 Da Isoelectric Point: 5.0098
>NTDB_id=937664 V6C61_RS07450 WP_023350375.1 1563317..1564369(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1516945]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVGKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE
Nucleotide
Download Length: 1053 bp
>NTDB_id=937664 V6C61_RS07450 WP_023350375.1 1563317..1564369(-) (recA) [Staphylococcus capitis subsp. urealyticus strain Sc1516945]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCTGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACATCAAGTGGTTCTGTAACAGTGGATAATGCCCTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATAGAAATTTATGGACCTGAGAGTTCAGGTAAAACAACAGTTGCTTTACATGCAATTGCA
GAGGTTCAAAAAAACGGTGGAGTAGCTGCATTCATTGATGCTGAACATGCACTTGATCCTGTATACGCTCAAGCTTTAGG
CGTAGATATTGACAACTTATACTTATCTCAACCTGATCATGGGGAACAGGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCAGTTGACATCGTCGTGGTTGACTCAGTGGCAGCATTAACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCTTTAAGAAAACTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAAACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTAAGATTAGAAGTAAGAAGAGCTGAACAACTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACTAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCATTCAGAGTAGCTGAAGTAGATATTATGTACGGTCAAGGTAT
TTCTAAAGAAGGCGAATTAATTGACTTAGGTGTTGAAAATGACATCGTTGGTAAATCTGGTGCTTGGTACTCTTATAATG
GTGATCGAATGGGTCAAGGTAAAGAAAACGTTAAAACTTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGAGAAAAATTAGGTATATTCGATGGAGACGTTGAAGAAACAGACGCTGAAGAAGAAGCACCTAAAACTTTATT
TGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.