Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DBT43_RS03180 | Genome accession | NZ_CP145136 |
| Coordinates | 709574..710689 (+) | Length | 371 a.a. |
| NCBI ID | WP_060778020.1 | Uniprot ID | A0A0X8FDW1 |
| Organism | Aerococcus urinae strain UMB0722 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 699632..727154 | 709574..710689 | within | 0 |
Gene organization within MGE regions
Location: 699632..727154
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBT43_RS03135 (DBT43_0003135) | thiI | 699632..700855 (+) | 1224 | WP_060778012.1 | tRNA uracil 4-sulfurtransferase ThiI | - |
| DBT43_RS03140 (DBT43_0003140) | - | 700941..701114 (-) | 174 | WP_060778013.1 | hypothetical protein | - |
| DBT43_RS03145 (DBT43_0003145) | gndA | 701345..702778 (+) | 1434 | WP_083589056.1 | NADP-dependent phosphogluconate dehydrogenase | - |
| DBT43_RS03150 (DBT43_0003150) | - | 702805..703512 (+) | 708 | WP_013668854.1 | response regulator transcription factor | - |
| DBT43_RS03155 (DBT43_0003155) | yidC | 703602..704528 (-) | 927 | WP_060778015.1 | membrane protein insertase YidC | - |
| DBT43_RS03160 (DBT43_0003160) | - | 704592..704870 (-) | 279 | WP_060778016.1 | acylphosphatase | - |
| DBT43_RS03165 (DBT43_0003165) | - | 705024..707378 (+) | 2355 | WP_060778017.1 | DNA translocase FtsK | - |
| DBT43_RS03170 (DBT43_0003170) | pgsA | 707624..708202 (+) | 579 | WP_060778018.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| DBT43_RS03175 (DBT43_0003175) | - | 708254..709492 (+) | 1239 | WP_060778019.1 | competence/damage-inducible protein A | - |
| DBT43_RS03180 (DBT43_0003180) | recA | 709574..710689 (+) | 1116 | WP_060778020.1 | recombinase RecA | Machinery gene |
| DBT43_RS03185 (DBT43_0003185) | rny | 710984..712555 (+) | 1572 | WP_060778021.1 | ribonuclease Y | - |
| DBT43_RS03190 (DBT43_0003190) | - | 713387..714544 (-) | 1158 | WP_060778022.1 | tyrosine-type recombinase/integrase | - |
| DBT43_RS03195 (DBT43_0003195) | - | 714661..715440 (-) | 780 | WP_060778023.1 | helix-turn-helix transcriptional regulator | - |
| DBT43_RS03200 (DBT43_0003200) | - | 715565..715783 (+) | 219 | WP_060778024.1 | transcriptional regulator | - |
| DBT43_RS03205 (DBT43_0003205) | - | 716060..716680 (+) | 621 | WP_060778025.1 | Rha family transcriptional regulator | - |
| DBT43_RS03210 (DBT43_0003210) | - | 716802..716978 (+) | 177 | WP_230080685.1 | CopG family transcriptional regulator | - |
| DBT43_RS03215 (DBT43_0003215) | - | 717168..717317 (+) | 150 | WP_156417363.1 | hypothetical protein | - |
| DBT43_RS03220 (DBT43_0003220) | - | 717349..717693 (+) | 345 | WP_060778026.1 | hypothetical protein | - |
| DBT43_RS03225 (DBT43_0003225) | - | 717864..718190 (+) | 327 | WP_060778027.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| DBT43_RS03230 (DBT43_0003230) | - | 718174..718473 (+) | 300 | WP_060778028.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DBT43_RS03235 (DBT43_0003235) | - | 718568..718972 (+) | 405 | WP_060778029.1 | hypothetical protein | - |
| DBT43_RS03240 (DBT43_0003240) | - | 718985..719269 (+) | 285 | WP_060778030.1 | helix-turn-helix domain-containing protein | - |
| DBT43_RS03245 (DBT43_0003245) | - | 719424..719909 (+) | 486 | WP_060778031.1 | hypothetical protein | - |
| DBT43_RS03250 (DBT43_0003250) | - | 719919..720857 (+) | 939 | WP_060778032.1 | primase alpha helix C-terminal domain-containing protein | - |
| DBT43_RS03255 (DBT43_0003255) | - | 720850..722328 (+) | 1479 | WP_060778033.1 | DNA primase family protein | - |
| DBT43_RS03260 (DBT43_0003260) | - | 722631..722879 (+) | 249 | WP_060778034.1 | hypothetical protein | - |
| DBT43_RS03265 (DBT43_0003265) | - | 722890..723132 (+) | 243 | WP_060778035.1 | hypothetical protein | - |
| DBT43_RS03270 (DBT43_0003270) | - | 723144..723386 (+) | 243 | WP_060778036.1 | hypothetical protein | - |
| DBT43_RS03275 (DBT43_0003275) | - | 723401..723670 (+) | 270 | WP_060778037.1 | hypothetical protein | - |
| DBT43_RS03280 (DBT43_0003280) | - | 723828..724262 (+) | 435 | WP_060778038.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| DBT43_RS03285 (DBT43_0003285) | - | 724284..724649 (+) | 366 | WP_060778039.1 | hypothetical protein | - |
| DBT43_RS03290 (DBT43_0003290) | - | 724670..725275 (+) | 606 | WP_060778040.1 | hypothetical protein | - |
| DBT43_RS03295 (DBT43_0003295) | - | 725320..725802 (+) | 483 | WP_060778041.1 | hypothetical protein | - |
| DBT43_RS03300 (DBT43_0003300) | - | 726542..726754 (+) | 213 | WP_230080686.1 | hypothetical protein | - |
| DBT43_RS03305 (DBT43_0003305) | - | 726738..727154 (+) | 417 | WP_060778043.1 | GTP pyrophosphokinase | - |
Sequence
Protein
Download Length: 371 a.a. Molecular weight: 40108.87 Da Isoelectric Point: 4.3861
>NTDB_id=937367 DBT43_RS03180 WP_060778020.1 709574..710689(+) (recA) [Aerococcus urinae strain UMB0722]
MSTSHDANRQKALDQALKQIEKNFGKGAIMKMGESTDTQVSTVPSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLSGSINKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDI
IGNRTKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGRENAKLYLTENPDIFK
EIDSKVRAEYGFGPAVEDDDSEDETSKEETKNDSSSDEENETLDLFNDDEE
MSTSHDANRQKALDQALKQIEKNFGKGAIMKMGESTDTQVSTVPSGSLSLDIALGVGGYPRGRIIEVYGPESSGKTTVAL
HAVAEVQKQGGIAAFIDAENALDPEYARALGVDIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEG
EMGDSHVGLQARLMSQALRKLSGSINKTKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRGERIKSGQDI
IGNRTKIKVVKNKVAPPFKVAEVDIMYGQGISQAGELVDLAADMDIIKKSGSWYSYGDDRIGQGRENAKLYLTENPDIFK
EIDSKVRAEYGFGPAVEDDDSEDETSKEETKNDSSSDEENETLDLFNDDEE
Nucleotide
Download Length: 1116 bp
>NTDB_id=937367 DBT43_RS03180 WP_060778020.1 709574..710689(+) (recA) [Aerococcus urinae strain UMB0722]
ATGAGTACATCACATGATGCAAACCGCCAAAAAGCTTTAGACCAGGCTCTTAAACAAATTGAAAAAAACTTCGGTAAGGG
AGCTATAATGAAAATGGGAGAATCGACGGATACTCAGGTTTCGACTGTCCCGTCAGGCTCCTTATCCTTAGATATCGCTC
TAGGAGTCGGAGGTTACCCGCGTGGACGAATTATTGAAGTCTACGGTCCAGAATCTTCCGGGAAAACCACTGTTGCCTTA
CACGCTGTTGCTGAGGTTCAGAAACAAGGTGGTATTGCTGCCTTTATTGATGCCGAGAACGCCTTAGACCCTGAATACGC
TAGAGCTTTAGGGGTTGACATTGATGAGCTATTACTCTCTCAACCAGATACTGGTGAACAAGGACTAGAGATTGCCGATG
CCTTAGTGTCCTCTGGTGCGATTGATATTGTTGTTGTCGATTCTGTTGCTGCCTTGGTTCCACGGGCTGAAATTGAAGGT
GAGATGGGGGACTCCCATGTGGGCCTCCAAGCTCGCTTGATGTCTCAAGCCCTACGGAAGTTATCGGGCTCCATTAATAA
GACGAAAACCATTGCCATGTTTATAAACCAGATCCGTGAAAAAGTAGGTGTCATGTTTGGTAACCCAGAAACCACCCCAG
GGGGACGGGCCCTAAAATTTTATTCCACTATCCGTCTAGAAGTGAGACGCGGTGAACGGATCAAATCCGGTCAGGATATT
ATTGGTAACCGCACCAAGATTAAAGTGGTAAAAAATAAGGTAGCTCCGCCATTTAAGGTTGCTGAAGTGGACATTATGTA
TGGCCAAGGGATTTCTCAAGCAGGTGAATTAGTCGATTTAGCTGCTGACATGGATATCATTAAGAAGAGTGGTTCTTGGT
ATTCATACGGGGATGACCGGATTGGCCAAGGACGCGAGAATGCCAAACTATATCTCACCGAAAATCCTGACATATTTAAG
GAAATTGATAGCAAGGTTCGAGCAGAGTATGGTTTTGGACCAGCTGTTGAAGATGACGATTCAGAGGATGAAACAAGCAA
AGAAGAAACCAAAAACGATTCATCAAGTGATGAAGAAAATGAGACCCTAGATTTATTTAATGATGATGAAGAATAA
ATGAGTACATCACATGATGCAAACCGCCAAAAAGCTTTAGACCAGGCTCTTAAACAAATTGAAAAAAACTTCGGTAAGGG
AGCTATAATGAAAATGGGAGAATCGACGGATACTCAGGTTTCGACTGTCCCGTCAGGCTCCTTATCCTTAGATATCGCTC
TAGGAGTCGGAGGTTACCCGCGTGGACGAATTATTGAAGTCTACGGTCCAGAATCTTCCGGGAAAACCACTGTTGCCTTA
CACGCTGTTGCTGAGGTTCAGAAACAAGGTGGTATTGCTGCCTTTATTGATGCCGAGAACGCCTTAGACCCTGAATACGC
TAGAGCTTTAGGGGTTGACATTGATGAGCTATTACTCTCTCAACCAGATACTGGTGAACAAGGACTAGAGATTGCCGATG
CCTTAGTGTCCTCTGGTGCGATTGATATTGTTGTTGTCGATTCTGTTGCTGCCTTGGTTCCACGGGCTGAAATTGAAGGT
GAGATGGGGGACTCCCATGTGGGCCTCCAAGCTCGCTTGATGTCTCAAGCCCTACGGAAGTTATCGGGCTCCATTAATAA
GACGAAAACCATTGCCATGTTTATAAACCAGATCCGTGAAAAAGTAGGTGTCATGTTTGGTAACCCAGAAACCACCCCAG
GGGGACGGGCCCTAAAATTTTATTCCACTATCCGTCTAGAAGTGAGACGCGGTGAACGGATCAAATCCGGTCAGGATATT
ATTGGTAACCGCACCAAGATTAAAGTGGTAAAAAATAAGGTAGCTCCGCCATTTAAGGTTGCTGAAGTGGACATTATGTA
TGGCCAAGGGATTTCTCAAGCAGGTGAATTAGTCGATTTAGCTGCTGACATGGATATCATTAAGAAGAGTGGTTCTTGGT
ATTCATACGGGGATGACCGGATTGGCCAAGGACGCGAGAATGCCAAACTATATCTCACCGAAAATCCTGACATATTTAAG
GAAATTGATAGCAAGGTTCGAGCAGAGTATGGTTTTGGACCAGCTGTTGAAGATGACGATTCAGAGGATGAAACAAGCAA
AGAAGAAACCAAAAACGATTCATCAAGTGATGAAGAAAATGAGACCCTAGATTTATTTAATGATGATGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.