Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VZ068_RS09375 Genome accession   NZ_CP144460
Coordinates   2194270..2195304 (+) Length   344 a.a.
NCBI ID   WP_259153886.1    Uniprot ID   -
Organism   Xanthomonas sp. 10-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2189270..2200304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZ068_RS09365 (VZ068_09370) ubiB 2191713..2193389 (+) 1677 WP_349657480.1 2-polyprenylphenol 6-hydroxylase -
  VZ068_RS09370 (VZ068_09375) lexA 2193456..2194097 (+) 642 WP_259153885.1 transcriptional repressor LexA -
  VZ068_RS09375 (VZ068_09380) recA 2194270..2195304 (+) 1035 WP_259153886.1 recombinase RecA Machinery gene
  VZ068_RS09380 (VZ068_09385) recX 2195554..2196042 (+) 489 WP_349657481.1 recombination regulator RecX -
  VZ068_RS09385 (VZ068_09390) alaS 2196144..2198792 (+) 2649 WP_349657482.1 alanine--tRNA ligase -
  VZ068_RS09390 (VZ068_09395) csrA 2198932..2199147 (+) 216 WP_104611342.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37059.64 Da        Isoelectric Point: 5.0737

>NTDB_id=933954 VZ068_RS09375 WP_259153886.1 2194270..2195304(+) (recA) [Xanthomonas sp. 10-10]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARGYLRDNPQVAAKL
EAELREKFQPTEAPPEAGEDADKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=933954 VZ068_RS09375 WP_259153886.1 2194270..2195304(+) (recA) [Xanthomonas sp. 10-10]
ATGGATGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGATCGAGGCCGTCGAAGTCATTCCGACCGGCTCGTTGATGCTGGACATCGCACTGGGGATCGGCG
GCCTGCCGAAGGGGCGCGTGGTGGAAATCTACGGACCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGGCGATCGCC
GAATGCCAGAAAAAGGGCGGGACCGCCGCGTTCATCGATGCCGAGCATGCGCTCGACCCGATCTATGCCGCCAAGCTGGG
CGTCAATGTCGACGATCTGCTGCTGTCGCAGCCCGATACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CCAGCTCGGTGGATATCGTGGTGATCGACTCGGTGGCTGCACTGACGCCGAAGGCCGAAATCGAAGGCGAAATGGGCGAT
CAGCTCCCGGGTCTGCAGGCGCGTTTGATGAGCCAGGCGCTGCGCAAGCTCACCGGTAACATCAAGCGGTCCAATACCCT
GGTGGTCTTCATCAATCAGCTGCGTATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGTCGTATCGGCGCAATCAAGAAGGGCGACGAAATCATCGGT
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGTTGGCGCCGCCTTTCAAGCAGGTCGTGACCGAAATCCTCTACGGCGA
GGGCATCAGCCGCGAGGGCGAATTGATCGACATGGGCGTGGAGGCCAAGCTGGTGGACAAGGCCGGCGCCTGGTACAGCT
ATGGCGACGAACGCATCGGTCAGGGTAAGGACAATGCACGTGGTTATCTGCGCGATAACCCGCAGGTGGCGGCCAAGCTC
GAAGCCGAGCTGCGTGAGAAGTTCCAGCCTACCGAAGCCCCGCCCGAAGCAGGCGAAGACGCCGACAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.477

100

0.695
  recA Pseudomonas stutzeri DSM 10701

70.623

97.965

0.692
  recA Ralstonia pseudosolanacearum GMI1000

75

91.86

0.689
  recA Acinetobacter baumannii D1279779

70.997

96.221

0.683
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

94.767

0.666
  recA Vibrio cholerae strain A1552

70.245

94.767

0.666
  recA Glaesserella parasuis strain SC1401

64.826

100

0.648
  recA Neisseria gonorrhoeae MS11

68.098

94.767

0.645
  recA Neisseria gonorrhoeae MS11

68.098

94.767

0.645
  recA Neisseria gonorrhoeae strain FA1090

68.098

94.767

0.645
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

97.093

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.677

97.093

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.062

93.023

0.596
  recA Helicobacter pylori strain NCTC11637

61.145

96.512

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

94.477

0.587
  recA Helicobacter pylori 26695

60.843

96.512

0.587
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus mitis NCTC 12261

60.366

95.349

0.576
  recA Streptococcus pyogenes NZ131

60

95.93

0.576
  recA Streptococcus mutans UA159

59.697

95.93

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

94.767

0.552