Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V4D31_RS07760 Genome accession   NZ_CP144374
Coordinates   1503668..1504693 (-) Length   341 a.a.
NCBI ID   WP_353685870.1    Uniprot ID   A0AAU8H098
Organism   Thermodesulfovibrio sp. 3462-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1498668..1509693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4D31_RS07740 (V4D31_07710) - 1499891..1500202 (-) 312 WP_353685866.1 hypothetical protein -
  V4D31_RS07745 (V4D31_07715) alaS 1500233..1502857 (-) 2625 WP_353685867.1 alanine--tRNA ligase -
  V4D31_RS07750 (V4D31_07720) - 1502861..1503196 (-) 336 WP_353685868.1 hypothetical protein -
  V4D31_RS07755 (V4D31_07725) - 1503193..1503687 (-) 495 WP_353685869.1 regulatory protein RecX -
  V4D31_RS07760 (V4D31_07730) recA 1503668..1504693 (-) 1026 WP_353685870.1 recombinase RecA Machinery gene
  V4D31_RS07765 (V4D31_07735) thpR 1504732..1505292 (-) 561 WP_353685871.1 RNA 2',3'-cyclic phosphodiesterase -
  V4D31_RS07770 (V4D31_07740) - 1505299..1505745 (-) 447 WP_353685872.1 phosphatidylglycerophosphatase A -
  V4D31_RS07775 (V4D31_07745) - 1505984..1506502 (+) 519 WP_353685873.1 chemotaxis protein CheW -
  V4D31_RS07780 (V4D31_07750) - 1506489..1506893 (-) 405 WP_353685874.1 hypothetical protein -
  V4D31_RS07785 (V4D31_07755) - 1506957..1507307 (-) 351 WP_353685875.1 hypothetical protein -
  V4D31_RS07790 (V4D31_07760) rsmA 1507435..1508208 (-) 774 WP_353685876.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  V4D31_RS07795 (V4D31_07765) - 1508201..1508839 (-) 639 WP_353685877.1 hypothetical protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36868.28 Da        Isoelectric Point: 6.8956

>NTDB_id=933879 V4D31_RS07760 WP_353685870.1 1503668..1504693(-) (recA) [Thermodesulfovibrio sp. 3462-1]
MNKEKLKALEIAISQIERNFGKGAIMRLGTKAQAEGISVIPTGSISLDIATGVGGYPRGRVIEIFGPESSGKTTLALHAI
AEAQRLGGVAAFIDAEHALDVNYASKLGVDVENLLISQPDTGEQALEVTETLVRSGAVDIIVIDSVAALVPKAEIEGEMG
DSLPGLQARLMSQALRKLTAAISKSQTVVIFINQLRQKIGVMFGNPETTPGGTALKFYASMRLDIRKTDTLKEGQDTTGG
RVRVKIVKNKVAPPFKEAHFDIYFNEGISKTGEVLDLAVEKGIIEKSGAWYSYNGTRFAQGRENAKEYLKSHPEIFNEIY
SKVMDAYGLKPKVIEGEKSEQ

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=933879 V4D31_RS07760 WP_353685870.1 1503668..1504693(-) (recA) [Thermodesulfovibrio sp. 3462-1]
ATGAATAAGGAGAAATTAAAGGCATTGGAGATTGCTATATCCCAGATTGAGAGAAATTTTGGCAAGGGCGCAATAATGCG
TCTTGGAACAAAGGCTCAAGCAGAAGGAATAAGTGTAATTCCTACAGGTTCAATATCCCTTGATATAGCAACAGGTGTTG
GAGGATATCCACGCGGAAGAGTTATAGAAATTTTTGGGCCTGAATCTTCAGGTAAAACAACCCTTGCACTCCATGCAATT
GCAGAAGCTCAGAGGCTTGGAGGTGTTGCAGCATTTATAGATGCTGAGCATGCCCTTGATGTGAATTACGCTTCAAAATT
AGGTGTTGATGTGGAAAATTTACTAATAAGCCAGCCTGATACTGGAGAGCAAGCTCTGGAAGTAACAGAAACCCTTGTCC
GAAGCGGAGCAGTTGACATTATTGTTATTGACTCAGTTGCTGCTCTTGTTCCAAAGGCTGAAATTGAAGGAGAAATGGGA
GATTCTCTTCCAGGTCTTCAGGCAAGGCTTATGAGTCAGGCTTTAAGAAAGCTTACAGCAGCTATATCAAAGTCTCAGAC
AGTTGTTATTTTCATAAATCAGCTCAGACAGAAAATTGGAGTAATGTTTGGAAATCCAGAGACAACTCCTGGAGGAACCG
CACTAAAATTTTATGCTTCAATGAGGCTGGATATAAGAAAAACAGACACATTAAAAGAAGGACAGGATACAACAGGTGGT
AGAGTAAGAGTTAAAATTGTGAAAAATAAAGTAGCACCGCCATTCAAAGAGGCTCACTTTGATATTTACTTTAATGAAGG
AATATCAAAGACAGGCGAGGTTCTTGATCTTGCAGTGGAAAAAGGAATTATTGAAAAATCTGGAGCATGGTACAGTTACA
ACGGAACAAGATTTGCTCAGGGTAGAGAAAATGCTAAAGAATATTTAAAAAGTCATCCAGAAATCTTCAATGAAATTTAT
TCCAAAGTTATGGATGCTTATGGATTAAAGCCAAAGGTCATAGAAGGTGAAAAATCGGAACAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

65.257

97.067

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

95.601

0.619
  recA Neisseria gonorrhoeae MS11

61.765

99.707

0.616
  recA Neisseria gonorrhoeae MS11

61.765

99.707

0.616
  recA Neisseria gonorrhoeae strain FA1090

61.765

99.707

0.616
  recA Streptococcus pneumoniae TIGR4

60.641

100

0.61
  recA Streptococcus pneumoniae Rx1

60.641

100

0.61
  recA Streptococcus pneumoniae D39

60.641

100

0.61
  recA Streptococcus pneumoniae R6

60.641

100

0.61
  recA Streptococcus mitis NCTC 12261

60.767

99.413

0.604
  recA Streptococcus mitis SK321

60.294

99.707

0.601
  recA Lactococcus lactis subsp. cremoris KW2

61.818

96.774

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.531

100

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

95.601

0.595
  recA Streptococcus mutans UA159

60.909

96.774

0.589
  recA Pseudomonas stutzeri DSM 10701

62.229

94.721

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

94.721

0.589
  recA Vibrio cholerae strain A1552

62.229

94.721

0.589
  recA Helicobacter pylori 26695

61.094

96.481

0.589
  recA Helicobacter pylori strain NCTC11637

61.094

96.481

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.856

95.894

0.584
  recA Streptococcus pyogenes NZ131

60.486

96.481

0.584
  recA Glaesserella parasuis strain SC1401

59.337

97.361

0.578
  recA Acinetobacter baylyi ADP1

61.129

93.548

0.572
  recA Acinetobacter baumannii D1279779

61.129

93.548

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

95.308

0.566