Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Aeroheme_RS18275 Genome accession   NZ_CP144265
Coordinates   3974138..3975199 (-) Length   353 a.a.
NCBI ID   WP_106885048.1    Uniprot ID   A0A8G0VI62
Organism   Aeromonas sp. DSM 116730     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3969138..3980199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aeroheme_RS18255 (Aeroheme_03644) csrA 3969150..3969338 (-) 189 WP_005315760.1 carbon storage regulator CsrA -
  Aeroheme_RS18260 (Aeroheme_03645) - 3969432..3970679 (-) 1248 WP_139744991.1 aspartate kinase -
  Aeroheme_RS18265 (Aeroheme_03646) alaS 3970696..3973320 (-) 2625 WP_307765342.1 alanine--tRNA ligase -
  Aeroheme_RS18270 (Aeroheme_03647) - 3973597..3974097 (-) 501 WP_163135674.1 regulatory protein RecX -
  Aeroheme_RS18275 (Aeroheme_03648) recA 3974138..3975199 (-) 1062 WP_106885048.1 recombinase RecA Machinery gene
  Aeroheme_RS18280 (Aeroheme_03649) pncC 3975280..3975771 (-) 492 WP_106887795.1 nicotinamide-nucleotide amidase -
  Aeroheme_RS18285 (Aeroheme_03650) - 3976021..3976428 (+) 408 WP_411166321.1 Spy/CpxP family protein refolding chaperone -
  Aeroheme_RS18290 (Aeroheme_03651) mutS 3976699..3979269 (+) 2571 WP_411166322.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37930.69 Da        Isoelectric Point: 4.9706

>NTDB_id=933083 Aeroheme_RS18275 WP_106885048.1 3974138..3975199(-) (recA) [Aeromonas sp. DSM 116730]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAAEVEA
RLRELLLSGAVPVEKPVAAVAEEFEDESEQEFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=933083 Aeroheme_RS18275 WP_106885048.1 3974138..3975199(-) (recA) [Aeromonas sp. DSM 116730]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGACATCGAAGCCATCTCCACCGGCTCCCTCTCCCTGGACGTGGCGCTGGGCATCGGCG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCGTCAGGTAAAACCACCCTCACCCTGCAGGTGATCGCG
GAAGCCCAGAAGAAAGGCAAGACCTGTGCCTTCGTCGATGCGGAACACGCACTCGATCCTATTTATGCTGCCAAGCTGGG
AGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACAGGTGAGCAGGCGCTGGAAATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCGGTGGCAGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAGATGGGTGAC
TCCCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGCTGACCGCTAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGTAGCCCCGAGACCACCACAGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTCCGTCTGGATATCCGTCGCATCGGCGCCATCAAGGACGGCGACGAAGTGGTCGGTAACGAG
ACCCGTGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAGTTCCAGATCTTCTACGGTGCCGGTAT
CTCCAAAGAGGGCGAGCTGGTTGATCTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGTTGTTCGCCGAGAACAAGGTGATGGCTGCCGAGGTGGAAGCC
CGCCTGCGTGAGCTGCTGCTCTCCGGTGCCGTGCCGGTCGAGAAGCCGGTGGCCGCGGTCGCCGAAGAGTTTGAAGACGA
AAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.876

96.034

0.748
  recA Vibrio cholerae strain A1552

78.354

92.918

0.728
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.354

92.918

0.728
  recA Glaesserella parasuis strain SC1401

71.347

98.867

0.705
  recA Acinetobacter baumannii D1279779

73.373

95.751

0.703
  recA Acinetobacter baylyi ADP1

73.636

93.484

0.688
  recA Ralstonia pseudosolanacearum GMI1000

72.289

94.051

0.68
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.351

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

93.768

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.368

0.592
  recA Helicobacter pylori strain NCTC11637

63.692

92.068

0.586
  recA Helicobacter pylori 26695

63.077

92.068

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.935

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

60.909

93.484

0.569
  recA Streptococcus pneumoniae TIGR4

61.61

91.501

0.564
  recA Streptococcus pneumoniae Rx1

61.61

91.501

0.564
  recA Streptococcus pneumoniae D39

61.61

91.501

0.564
  recA Streptococcus pneumoniae R6

61.61

91.501

0.564
  recA Streptococcus mitis SK321

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.918

0.561
  recA Streptococcus mitis NCTC 12261

61.3

91.501

0.561
  recA Streptococcus mutans UA159

60.372

91.501

0.552
  recA Streptococcus pyogenes NZ131

60.062

91.501

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.585

91.501

0.527