Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VUI23_RS04655 Genome accession   NZ_CP144164
Coordinates   1101451..1102485 (+) Length   344 a.a.
NCBI ID   WP_216046826.1    Uniprot ID   -
Organism   Alteromonas sp. M12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096451..1107485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUI23_RS04645 mutS 1098009..1100588 (-) 2580 WP_342807063.1 DNA mismatch repair protein MutS -
  VUI23_RS04650 pncC 1100754..1101239 (+) 486 WP_342807065.1 nicotinamide-nucleotide amidase -
  VUI23_RS04655 recA 1101451..1102485 (+) 1035 WP_216046826.1 recombinase RecA Machinery gene
  VUI23_RS04660 - 1102853..1103299 (+) 447 WP_342807067.1 PA2169 family four-helix-bundle protein -
  VUI23_RS04665 - 1103385..1103543 (+) 159 WP_216046824.1 YqaE/Pmp3 family membrane protein -
  VUI23_RS04670 - 1103635..1104441 (-) 807 WP_342807069.1 endonuclease/exonuclease/phosphatase family protein -
  VUI23_RS04675 - 1104832..1105149 (+) 318 WP_342807071.1 DUF883 domain-containing protein -
  VUI23_RS04680 - 1105157..1105591 (+) 435 WP_342807073.1 hypothetical protein -
  VUI23_RS04685 - 1105623..1105862 (+) 240 WP_216046820.1 hypothetical protein -
  VUI23_RS04690 - 1106124..1106486 (+) 363 WP_342807075.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37019.59 Da        Isoelectric Point: 5.3218

>NTDB_id=932546 VUI23_RS04655 WP_216046826.1 1101451..1102485(+) (recA) [Alteromonas sp. M12]
MDDNKSRALSAALGQIEKQFGKGAIMRLGDNQALDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQAIA
EAQKMGKTCAFVDAEHALDPVYAGKLGVNIDDLLVSQPDTGEQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNE
TRVKVVKNKVAPPFKQAEFQILYGQGICKEAELIDLGVKQKFVEKAGAWYSYNGERIGQGKANVVKYLKEHTDMADDIEK
RLRAELLLSKTVKPEDPVASEDVL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=932546 VUI23_RS04655 WP_216046826.1 1101451..1102485(+) (recA) [Alteromonas sp. M12]
ATGGACGATAATAAATCTCGCGCATTATCAGCTGCTCTAGGGCAGATTGAAAAACAATTTGGTAAAGGTGCAATTATGCG
CCTCGGAGACAACCAAGCTTTAGATATTGAAGCTATTTCAACAGGTTCTTTGACGATTGATATCGCGTTGGGAATAGGCG
GTCTTCCTTGTGGACGAGTCGTTGAGATATATGGTCCTGAATCATCAGGTAAAACAACGCTAACTTTGCAAGCTATTGCT
GAAGCGCAAAAAATGGGTAAAACCTGTGCGTTTGTTGATGCAGAGCATGCCTTGGATCCTGTCTATGCAGGAAAGTTAGG
GGTAAACATCGATGATCTTTTGGTTTCGCAGCCAGATACCGGTGAACAAGCATTGGAAATCTGCGATATGTTAGTTCGTT
CTGGCGCAGTAGATGTTGTAGTCGTTGACTCAGTGGCAGCGTTAACGCCTAAAGCTGAGATCGAAGGTGATATGGGTGAT
TCTCATGTTGGTTTACAAGCACGTCTGATGTCACAAGCGCTACGTAAATTAACGGGTAACATTAAACGTTCAAATACTTT
GGTAATCTTCATTAACCAAATTCGTATGAAAATTGGCGTTATGTTTGGTTCGCCTGAAACCACAACTGGTGGTAATGCAC
TTAAGTTCTATGCCTCTGTAAGATTAGATATTAGACGTATCGGCGCGATTAAAGACGGTGATGAAGTGGTTGGTAATGAA
ACCCGTGTGAAAGTTGTTAAAAACAAAGTCGCACCTCCATTTAAACAGGCTGAATTCCAAATTCTATATGGCCAAGGTAT
TTGTAAAGAAGCCGAACTTATTGATTTGGGTGTTAAGCAAAAGTTTGTTGAGAAGGCTGGAGCTTGGTATAGCTACAATG
GCGAACGTATCGGTCAAGGAAAAGCCAACGTGGTTAAGTATTTGAAAGAACATACTGATATGGCTGACGATATCGAGAAG
CGTCTGAGAGCAGAGTTGTTGCTGTCTAAAACAGTCAAACCAGAAGATCCTGTAGCTTCTGAGGATGTGTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.126

99.128

0.765
  recA Vibrio cholerae strain A1552

75.942

100

0.762
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.942

100

0.762
  recA Acinetobacter baylyi ADP1

73.977

99.419

0.735
  recA Acinetobacter baumannii D1279779

75.529

96.221

0.727
  recA Neisseria gonorrhoeae strain FA1090

74.154

94.477

0.701
  recA Neisseria gonorrhoeae MS11

74.154

94.477

0.701
  recA Neisseria gonorrhoeae MS11

74.154

94.477

0.701
  recA Glaesserella parasuis strain SC1401

73.148

94.186

0.689
  recA Ralstonia pseudosolanacearum GMI1000

74.598

90.407

0.674
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

95.058

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

65.944

93.895

0.619
  recA Helicobacter pylori strain NCTC11637

63.284

97.384

0.616
  recA Helicobacter pylori 26695

62.687

97.384

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

60.882

98.837

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

96.221

0.599
  recA Streptococcus pneumoniae TIGR4

61.585

95.349

0.587
  recA Streptococcus pneumoniae Rx1

61.585

95.349

0.587
  recA Streptococcus pneumoniae D39

61.585

95.349

0.587
  recA Streptococcus pneumoniae R6

61.585

95.349

0.587
  recA Streptococcus mutans UA159

58.14

100

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.895

0.581
  recA Streptococcus mitis NCTC 12261

60.366

95.349

0.576
  recA Streptococcus pyogenes NZ131

60.061

95.349

0.573
  recA Streptococcus mitis SK321

60.061

95.349

0.573
  recA Lactococcus lactis subsp. cremoris KW2

58.951

94.186

0.555