Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Q1I82_RS14895 Genome accession   NZ_CP143633
Coordinates   3424087..3425160 (-) Length   357 a.a.
NCBI ID   WP_037420979.1    Uniprot ID   A0A501XXR1
Organism   Shewanella xiamenensis strain 8M34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3419087..3430160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q1I82_RS14880 - 3419157..3420413 (-) 1257 WP_144376150.1 aspartate kinase -
  Q1I82_RS14885 alaS 3420423..3423047 (-) 2625 WP_249553363.1 alanine--tRNA ligase -
  Q1I82_RS14890 - 3423602..3424024 (-) 423 WP_413740223.1 regulatory protein RecX -
  Q1I82_RS14895 recA 3424087..3425160 (-) 1074 WP_037420979.1 recombinase RecA Machinery gene
  Q1I82_RS14900 mutS 3425543..3428113 (+) 2571 WP_037426206.1 DNA mismatch repair protein MutS -
  Q1I82_RS14905 rpoS 3428197..3429177 (-) 981 WP_037421178.1 RNA polymerase sigma factor RpoS -
  Q1I82_RS14910 - 3429259..3430155 (-) 897 WP_249553361.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38086.53 Da        Isoelectric Point: 4.8722

>NTDB_id=930089 Q1I82_RS14895 WP_037420979.1 3424087..3425160(-) (recA) [Shewanella xiamenensis strain 8M34]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSALASSASDDDNIEGNIDLETGEVF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=930089 Q1I82_RS14895 WP_037420979.1 3424087..3425160(-) (recA) [Shewanella xiamenensis strain 8M34]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTTGAGACCATTTCTACTGGTTCTCTTTCCCTTGACGTTGCCCTCGGTG
CGGGCGGCCTACCAATGGGCCGTATTGTTGAGATTTATGGCCCTGAATCATCAGGTAAAACAACTCTGACATTAGAAGTG
ATTGCAGCTGCTCAGCGCGAAGGTAAAACCTGTGCCTTTATCGATGCGGAGCACGCTCTCGATCCTATCTACGCGAAAAA
GTTAGGTGTAGATATTGATAACTTATTGTGTTCACAACCCGATACCGGTGAACAAGCCCTTGAGATCTGTGATGCGTTAA
CCCGTTCTGGCGCGGTAGATGTGATCATCGTTGACTCGGTCGCGGCATTAACCCCCAAGGCAGAGATTGAGGGCGAAATC
GGTGACTCACACATGGGCTTAGCGGCGCGTATGATGAGCCAAGCGATGCGTAAGTTAGCGGGTAACCTCAAGCAATCGAA
TACACTGTTAATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGTGGTA
ATGCTCTGAAATTCTATGCTTCTGTTCGTTTAGATATTCGCCGTACTGGTGCTATCAAAGAAGGCGATGAAGTGGTTGGT
AACGAGACTCGTGTCAAAGTGGTTAAAAACAAAGTGGCTGCACCATTTAAGCAGGCTGAGTTTCAAATCCTTTACGGTCA
AGGTATCAACCGTACTGGCGAGTTAGTCGATTTAGGGGTAGCCCATAAACTGATTGAGAAAGCTGGTGCTTGGTATAGCT
ACAAGGGCGATAAAATTGGTCAAGGCCGTGCCAATGCGGGTAAATATTTGACTGAAAACCCAGCCATTGCCGCTGAAATC
GATAAGACATTGCGTGAGTTATTATTGAGTAACCCAAGTGCACTGGCATCATCAGCATCCGATGATGATAATATCGAGGG
GAATATTGATTTAGAAACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A501XXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.899

96.639

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.899

96.639

0.801
  recA Pseudomonas stutzeri DSM 10701

73.021

95.518

0.697
  recA Glaesserella parasuis strain SC1401

68.571

98.039

0.672
  recA Acinetobacter baumannii D1279779

70.088

95.518

0.669
  recA Acinetobacter baylyi ADP1

71.903

92.717

0.667
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae strain FA1090

69.35

90.476

0.627
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.235

0.625
  recA Streptococcus mitis SK321

58.678

100

0.597
  recA Streptococcus mitis NCTC 12261

58.678

100

0.597
  recA Streptococcus pneumoniae TIGR4

63.415

91.877

0.583
  recA Streptococcus pneumoniae Rx1

63.415

91.877

0.583
  recA Streptococcus pneumoniae D39

63.415

91.877

0.583
  recA Streptococcus pneumoniae R6

63.415

91.877

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.42

96.639

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

93.277

0.569
  recA Streptococcus pyogenes NZ131

61.585

91.877

0.566
  recA Streptococcus mutans UA159

61.28

91.877

0.563
  recA Helicobacter pylori strain NCTC11637

60.241

92.997

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Helicobacter pylori 26695

59.94

92.997

0.557
  recA Lactococcus lactis subsp. cremoris KW2

60.061

91.877

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.356

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.235

0.541