Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MWL86_RS00230 Genome accession   NZ_AP025585
Coordinates   53522..54682 (+) Length   386 a.a.
NCBI ID   WP_279612170.1    Uniprot ID   -
Organism   Pyramidobacter piscolens strain CE91-St28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48522..59682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWL86_RS00200 (CE91St28_00440) rpe 48832..49515 (+) 684 WP_009164101.1 ribulose-phosphate 3-epimerase -
  MWL86_RS00205 (CE91St28_00450) - 49574..50572 (+) 999 WP_244388839.1 helix-turn-helix domain-containing protein -
  MWL86_RS00210 (CE91St28_00460) rimO 50576..51880 (+) 1305 WP_244388840.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MWL86_RS00215 (CE91St28_00470) - 51873..52370 (+) 498 WP_009164098.1 phosphatidylglycerophosphatase A -
  MWL86_RS00220 (CE91St28_00480) - 52404..52901 (+) 498 WP_009164097.1 nicotinamide-nucleotide amidohydrolase family protein -
  MWL86_RS00225 (CE91St28_00490) thpR 52901..53485 (+) 585 WP_009164096.1 RNA 2',3'-cyclic phosphodiesterase -
  MWL86_RS00230 (CE91St28_00500) recA 53522..54682 (+) 1161 WP_279612170.1 recombinase RecA Machinery gene
  MWL86_RS00235 (CE91St28_00510) - 55287..56666 (+) 1380 WP_244388841.1 radical SAM protein -
  MWL86_RS00240 (CE91St28_00520) - 56969..58222 (+) 1254 WP_244388842.1 ATP-binding protein -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 41513.31 Da        Isoelectric Point: 4.9361

>NTDB_id=92852 MWL86_RS00230 WP_279612170.1 53522..54682(+) (recA) [Pyramidobacter piscolens strain CE91-St28]
MAEAKKGKKLTREDILEQALDDIRSKFGDGSIMRLGERNTANVEVIPTGILPLDVALGIGGLPRGRIVEVFGPEGSGKTT
LALHAIAEAQKAGGVAAFIDAEHALDPRLAAALGVQIESLYLSQPDSGEQALFILETLVRSGAVDIVVVDSVAALTPQAE
IDGTIGESQVGLQARLMSYGLRRLTASIARSNCVVVFINQLRATIPTGYSKGPTETTTGGRALKFYTSVRIEVRRGKQIS
KGDDVIGHELYIKVVKNKQAPPFRSAHCSLIYGKGIPLTMSIVDMAIDANVIKRKGSWLTYKGETIAQGKDRLAEFLDKN
PEMLAEIRKTVLDQAAEGLGFYTAPEKSDDEDSVDSGHGVDIDEEVIDLDISDESMQAEPEKEGKR

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=92852 MWL86_RS00230 WP_279612170.1 53522..54682(+) (recA) [Pyramidobacter piscolens strain CE91-St28]
TTGGCTGAAGCAAAAAAGGGCAAAAAACTGACGCGCGAGGACATTCTCGAGCAGGCGCTCGACGACATCCGCAGCAAGTT
CGGCGACGGTTCGATCATGCGCCTCGGCGAGCGCAACACGGCAAACGTGGAAGTGATCCCCACGGGCATCCTGCCGCTGG
ACGTGGCGCTCGGCATCGGCGGTCTTCCCCGCGGCCGCATCGTCGAGGTCTTCGGACCGGAGGGCAGCGGCAAGACCACG
CTGGCGCTGCACGCCATTGCCGAAGCGCAGAAGGCCGGCGGCGTGGCGGCCTTCATCGACGCCGAACACGCTCTCGATCC
GCGTCTCGCGGCGGCACTGGGCGTGCAGATCGAATCGCTCTACCTGTCGCAGCCGGACAGCGGCGAACAGGCGCTTTTCA
TCCTCGAGACGCTGGTGCGCAGCGGCGCCGTGGACATCGTCGTCGTCGACTCGGTGGCGGCGCTGACGCCGCAGGCGGAG
ATCGACGGCACGATCGGCGAGAGCCAGGTGGGCCTGCAGGCGCGCCTGATGTCCTACGGACTGCGTCGCCTCACCGCTTC
GATCGCCCGCAGCAACTGCGTGGTCGTGTTCATCAACCAGCTGCGCGCCACGATCCCCACGGGCTACTCCAAAGGGCCCA
CGGAGACGACGACGGGCGGCCGCGCCCTCAAGTTCTACACTTCCGTGCGCATCGAAGTGCGCCGCGGCAAGCAGATCTCC
AAGGGCGACGACGTGATCGGCCACGAGCTCTACATCAAGGTGGTCAAGAACAAGCAGGCGCCGCCGTTCCGCAGCGCCCA
CTGTTCGCTGATCTACGGCAAGGGCATTCCCCTGACCATGTCCATCGTCGACATGGCCATCGACGCCAACGTGATCAAGC
GCAAGGGCTCGTGGCTCACCTACAAGGGCGAGACTATCGCCCAGGGCAAGGACCGTCTGGCCGAATTCCTCGACAAGAAT
CCCGAGATGCTGGCCGAGATCCGCAAGACCGTGCTCGATCAGGCCGCTGAAGGCCTGGGCTTCTACACGGCGCCGGAAAA
GAGCGACGACGAAGATTCCGTGGACAGCGGCCACGGCGTGGACATCGACGAAGAAGTGATCGATCTGGACATCTCCGACG
AGTCCATGCAGGCCGAACCTGAGAAAGAAGGCAAAAGGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

53.646

99.482

0.534
  recA Streptococcus mitis NCTC 12261

53.385

99.482

0.531
  recA Streptococcus pneumoniae R6

52.073

100

0.521
  recA Streptococcus pneumoniae Rx1

52.073

100

0.521
  recA Streptococcus pneumoniae D39

52.073

100

0.521
  recA Streptococcus pneumoniae TIGR4

52.073

100

0.521
  recA Glaesserella parasuis strain SC1401

50.411

94.56

0.477
  recA Streptococcus mutans UA159

56.79

83.938

0.477
  recA Neisseria gonorrhoeae MS11

54.381

85.751

0.466
  recA Neisseria gonorrhoeae MS11

54.381

85.751

0.466
  recA Neisseria gonorrhoeae strain FA1090

54.381

85.751

0.466
  recA Bacillus subtilis subsp. subtilis str. 168

56.25

82.902

0.466
  recA Streptococcus pyogenes NZ131

55.247

83.938

0.464
  recA Acinetobacter baylyi ADP1

55.486

82.642

0.459
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.988

84.456

0.456
  recA Latilactobacillus sakei subsp. sakei 23K

53.354

84.974

0.453
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.348

83.42

0.453
  recA Vibrio cholerae O1 biovar El Tor strain E7946

49.856

89.896

0.448
  recA Vibrio cholerae strain A1552

49.856

89.896

0.448
  recA Ralstonia pseudosolanacearum GMI1000

55.987

80.052

0.448
  recA Lactococcus lactis subsp. cremoris KW2

52.108

86.01

0.448
  recA Acinetobacter baumannii D1279779

53.292

82.642

0.44
  recA Pseudomonas stutzeri DSM 10701

53.481

81.865

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.366

82.124

0.43
  recA Helicobacter pylori strain NCTC11637

51.935

80.311

0.417
  recA Helicobacter pylori 26695

51.935

80.311

0.417

Multiple sequence alignment