Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8493_RS05390 | Genome accession | NZ_AP028341 |
| Coordinates | 1035241..1035546 (+) | Length | 101 a.a. |
| NCBI ID | WP_052784994.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain BCH-10328 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1030241..1040546
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8493_RS05365 (B10328_10410) | rpsR | 1030599..1030859 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| R8493_RS05370 (B10328_10420) | lon | 1030916..1033291 (-) | 2376 | WP_215431912.1 | endopeptidase La | - |
| R8493_RS05375 (B10328_10430) | - | 1033307..1033954 (-) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| R8493_RS05380 (B10328_10440) | fliW | 1034118..1034507 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8493_RS05385 (B10328_10450) | proC | 1034507..1035244 (+) | 738 | WP_002824859.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8493_RS05390 (B10328_10460) | ctsT | 1035241..1035546 (+) | 306 | WP_052784994.1 | hypothetical protein | Machinery gene |
| R8493_RS05395 (B10328_10470) | - | 1035539..1036207 (+) | 669 | WP_301754001.1 | hypothetical protein | - |
| R8493_RS05400 (B10328_10480) | - | 1036204..1036656 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8493_RS05405 (B10328_10490) | - | 1036649..1037278 (-) | 630 | WP_002824854.1 | uroporphyrinogen-III synthase | - |
| R8493_RS05410 (B10328_10500) | thiE | 1037256..1037888 (-) | 633 | WP_002824853.1 | thiamine phosphate synthase | - |
| R8493_RS05415 (B10328_10510) | thiD | 1037878..1038690 (-) | 813 | WP_317647044.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8493_RS05420 (B10328_10520) | - | 1038690..1039373 (-) | 684 | WP_002824849.1 | 3-methyladenine DNA glycosylase | - |
| R8493_RS05425 (B10328_10530) | - | 1039370..1040131 (-) | 762 | WP_072215388.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12274.08 Da Isoelectric Point: 6.0617
>NTDB_id=92852 R8493_RS05390 WP_052784994.1 1035241..1035546(+) (ctsT) [Campylobacter coli strain BCH-10328]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDLKENSANDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDLKENSANDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=92852 R8493_RS05390 WP_052784994.1 1035241..1035546(+) (ctsT) [Campylobacter coli strain BCH-10328]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTGGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATCTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTGGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATCTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
48.98 |
97.03 |
0.475 |