Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V0I27_RS09980 Genome accession   NZ_CP143277
Coordinates   2303645..2304703 (-) Length   352 a.a.
NCBI ID   WP_061428768.1    Uniprot ID   A0A127EJQ8
Organism   Clostridium perfringens strain SXD-8213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2298645..2309703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0I27_RS09960 (V0I27_09960) - 2299583..2299843 (-) 261 WP_003459789.1 HPr family phosphocarrier protein -
  V0I27_RS09965 (V0I27_09965) - 2299938..2301131 (-) 1194 WP_061428767.1 pyridoxal phosphate-dependent aminotransferase -
  V0I27_RS09970 (V0I27_09970) - 2301283..2301543 (-) 261 WP_003459803.1 stage V sporulation protein S -
  V0I27_RS09975 (V0I27_09975) rny 2301761..2303296 (-) 1536 WP_003459753.1 ribonuclease Y -
  V0I27_RS09980 (V0I27_09980) recA 2303645..2304703 (-) 1059 WP_061428768.1 recombinase RecA Machinery gene
  V0I27_RS09985 (V0I27_09985) pgsA 2304839..2305429 (-) 591 WP_061428769.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V0I27_RS09990 (V0I27_09990) rimO 2305413..2306750 (-) 1338 WP_329743757.1 30S ribosomal protein S12 methylthiotransferase RimO -
  V0I27_RS09995 (V0I27_09995) - 2306819..2309209 (-) 2391 WP_329743758.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38008.50 Da        Isoelectric Point: 5.1911

>NTDB_id=928480 V0I27_RS09980 WP_061428768.1 2303645..2304703(-) (recA) [Clostridium perfringens strain SXD-8213]
MANIDKDKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPRGRIIEIYGPESSGKTTVALH
VVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGIT
GNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALD
IENQIREKYSLPLAKAVESVDVEKNTEESVES

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=928480 V0I27_RS09980 WP_061428768.1 2303645..2304703(-) (recA) [Clostridium perfringens strain SXD-8213]
ATGGCAAATATAGATAAAGATAAATTAAAAGCTATTGAGATGGCTATGGGTCAAATAGAGAAGCAATTTGGAAAGGGATC
AGTAATGAAACTTGGCGAGCAAGGAGCTCCTCAAATGGATGCTGTTTCTACTGGATGTTTAGACCTTGATATAGCTTTAG
GAATCGGTGGAGTACCAAGAGGAAGAATTATTGAGATATATGGACCAGAAAGTTCAGGTAAAACAACAGTGGCTTTACAT
GTAGTAGCAGAAGCACAAAAATTAGGGGGAGCAGCAGCGTATATAGATGCAGAGCATGCTTTAGATCCAGTTTATGCAAA
AAGATTAGGTGTTAATATAGATGATTTAGTAGTTTCACAACCAGATACAGGAGAACAGGCTTTAGAGATAACAGAAGCTT
TAGTTAGATCAGGAGCTATAGATGTTTTAGTTGTGGACTCAGTTGCGGCTTTAGTTCCAAGAGCGGAAATTGAAGGTGAA
ATGGGTGATTCTCACGTTGGTCTTCAAGCTAGATTAATGTCACAAGCTTTAAGAAAGTTAACAGGAACAATCAACAAATC
AAACTGCGTAGTAATATTCATAAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAAACAACACCTGGTG
GTAGAGCATTAAAGTTCTATGCTTCAGTTAGAATGGACATAAGAAGAATAGATTCAATAAAACAAGGTGACGGAATAACT
GGTAATAGAACAAGAGTTAAAATAGTTAAGAATAAGGTCGCTCCTCCATTTAAGCAAGCTGAGTTTGATATAATGTACAA
TGAAGGTATATCAAAAGAAGGTAATATAGTAGACGTTGGAGTAAAAGAAAATATAGTACAAAAGAGTGGTGCTTGGTTCT
CATATGGAGATATAAGATTAGGCCAAGGTAGAGAAAATGCTAAACAATATTTAAAAGAGAATCCAGCAGTTGCTTTAGAT
ATAGAAAATCAAATAAGAGAAAAATATTCTCTTCCTTTAGCTAAGGCTGTTGAATCAGTAGATGTAGAAAAAAATACAGA
AGAGTCTGTTGAAAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127EJQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.692

92.33

0.662
  recA Acinetobacter baylyi ADP1

62.899

98.011

0.616
  recA Helicobacter pylori strain NCTC11637

66.769

92.33

0.616
  recA Helicobacter pylori 26695

66.769

92.33

0.616
  recA Latilactobacillus sakei subsp. sakei 23K

66.978

91.193

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.939

93.182

0.605
  recA Streptococcus mutans UA159

60.857

99.432

0.605
  recA Pseudomonas stutzeri DSM 10701

65.538

92.33

0.605
  recA Streptococcus pneumoniae Rx1

61.808

97.443

0.602
  recA Streptococcus pneumoniae D39

61.808

97.443

0.602
  recA Streptococcus pneumoniae R6

61.808

97.443

0.602
  recA Streptococcus pneumoniae TIGR4

61.808

97.443

0.602
  recA Vibrio cholerae strain A1552

64.134

93.466

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.134

93.466

0.599
  recA Acinetobacter baumannii D1279779

64.923

92.33

0.599
  recA Glaesserella parasuis strain SC1401

61.047

97.727

0.597
  recA Neisseria gonorrhoeae strain FA1090

65.109

91.193

0.594
  recA Neisseria gonorrhoeae MS11

65.109

91.193

0.594
  recA Neisseria gonorrhoeae MS11

65.109

91.193

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

92.045

0.594
  recA Streptococcus mitis SK321

64.11

92.614

0.594
  recA Streptococcus mitis NCTC 12261

63.804

92.614

0.591
  recA Streptococcus pyogenes NZ131

63.303

92.898

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

93.182

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.883

92.614

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.42

92.045

0.565