Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LMS42_RS02020 | Genome accession | NZ_CP143271 |
| Coordinates | 428638..429696 (+) | Length | 352 a.a. |
| NCBI ID | WP_228571839.1 | Uniprot ID | - |
| Organism | Clostridium perfringens strain P201 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 389500..448030 | 428638..429696 | within | 0 |
| IS/Tn | 429937..430989 | 428638..429696 | flank | 241 |
Gene organization within MGE regions
Location: 389500..448030
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMS42_RS01845 (LMS42_001845) | rplS | 389969..390316 (+) | 348 | WP_003449446.1 | 50S ribosomal protein L19 | - |
| LMS42_RS01850 (LMS42_001850) | ylqF | 390463..391308 (+) | 846 | WP_228571863.1 | ribosome biogenesis GTPase YlqF | - |
| LMS42_RS01855 (LMS42_001855) | - | 391324..392142 (+) | 819 | WP_003475248.1 | ribonuclease HII | - |
| LMS42_RS01860 (LMS42_001860) | - | 392143..392511 (-) | 369 | WP_115613588.1 | YraN family protein | - |
| LMS42_RS01865 (LMS42_001865) | - | 392641..394164 (+) | 1524 | WP_195961983.1 | YifB family Mg chelatase-like AAA ATPase | - |
| LMS42_RS01870 (LMS42_001870) | dprA | 394165..395247 (+) | 1083 | WP_228635865.1 | DNA-processing protein DprA | - |
| LMS42_RS01875 (LMS42_001875) | topA | 395292..397394 (+) | 2103 | WP_003449413.1 | type I DNA topoisomerase | - |
| LMS42_RS01880 (LMS42_001880) | codY | 397536..398312 (+) | 777 | WP_003449426.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| LMS42_RS01885 (LMS42_001885) | rpsB | 398695..399396 (+) | 702 | WP_003470452.1 | 30S ribosomal protein S2 | - |
| LMS42_RS01890 (LMS42_001890) | tsf | 399476..400387 (+) | 912 | WP_003459744.1 | translation elongation factor Ts | - |
| LMS42_RS01895 (LMS42_001895) | pyrH | 400480..401193 (+) | 714 | WP_003459788.1 | UMP kinase | - |
| LMS42_RS01900 (LMS42_001900) | frr | 401207..401764 (+) | 558 | WP_003459781.1 | ribosome recycling factor | - |
| LMS42_RS01905 (LMS42_001905) | - | 401829..402590 (+) | 762 | WP_124228655.1 | isoprenyl transferase | - |
| LMS42_RS01910 (LMS42_001910) | - | 402608..403402 (+) | 795 | WP_003459799.1 | phosphatidate cytidylyltransferase | - |
| LMS42_RS01915 (LMS42_001915) | - | 403762..404916 (+) | 1155 | WP_110077179.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| LMS42_RS01920 (LMS42_001920) | rseP | 404928..405935 (+) | 1008 | WP_003466788.1 | RIP metalloprotease RseP | - |
| LMS42_RS01925 (LMS42_001925) | ispG | 405955..407004 (+) | 1050 | WP_060670728.1 | flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | - |
| LMS42_RS01930 (LMS42_001930) | - | 407082..411431 (+) | 4350 | WP_061415779.1 | PolC-type DNA polymerase III | - |
| LMS42_RS01935 (LMS42_001935) | rimP | 411664..412128 (+) | 465 | WP_003459796.1 | ribosome maturation factor RimP | - |
| LMS42_RS01940 (LMS42_001940) | nusA | 412148..413248 (+) | 1101 | WP_003449452.1 | transcription termination factor NusA | - |
| LMS42_RS01945 (LMS42_001945) | rnpM | 413276..413542 (+) | 267 | WP_003459790.1 | RNase P modulator RnpM | - |
| LMS42_RS01950 (LMS42_001950) | - | 413535..413837 (+) | 303 | WP_003459801.1 | 50S ribosomal protein L7ae-like protein | - |
| LMS42_RS01955 (LMS42_001955) | infB | 413868..415907 (+) | 2040 | WP_003449445.1 | translation initiation factor IF-2 | - |
| LMS42_RS01960 (LMS42_001960) | rbfA | 415929..416279 (+) | 351 | WP_003449473.1 | 30S ribosome-binding factor RbfA | - |
| LMS42_RS01965 (LMS42_001965) | - | 416283..417236 (+) | 954 | WP_003459795.1 | DHH family phosphoesterase | - |
| LMS42_RS01970 (LMS42_001970) | truB | 417240..418124 (+) | 885 | WP_228581054.1 | tRNA pseudouridine(55) synthase TruB | - |
| LMS42_RS01975 (LMS42_001975) | - | 418128..419057 (+) | 930 | WP_111936768.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| LMS42_RS01980 (LMS42_001980) | rpsO | 419173..419436 (+) | 264 | WP_003449423.1 | 30S ribosomal protein S15 | - |
| LMS42_RS01985 (LMS42_001985) | - | 419528..421636 (+) | 2109 | WP_011592585.1 | polyribonucleotide nucleotidyltransferase | - |
| LMS42_RS01990 (LMS42_001990) | - | 421772..422047 (+) | 276 | WP_003459765.1 | YlmC/YmxH family sporulation protein | - |
| LMS42_RS01995 (LMS42_001995) | dapG | 422061..423257 (+) | 1197 | WP_228635863.1 | aspartate kinase | - |
| LMS42_RS02000 (LMS42_002000) | - | 423311..424000 (+) | 690 | WP_003465787.1 | ClpP family protease | - |
| LMS42_RS02005 (LMS42_002005) | - | 424132..426522 (+) | 2391 | WP_061415777.1 | FtsK/SpoIIIE family DNA translocase | - |
| LMS42_RS02010 (LMS42_002010) | rimO | 426591..427928 (+) | 1338 | WP_003459746.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| LMS42_RS02015 (LMS42_002015) | pgsA | 427912..428502 (+) | 591 | WP_003469140.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LMS42_RS02020 (LMS42_002020) | recA | 428638..429696 (+) | 1059 | WP_228571839.1 | recombinase RecA | Machinery gene |
| LMS42_RS02025 (LMS42_002025) | - | 429937..430989 (+) | 1053 | WP_228573336.1 | IS30 family transposase | - |
| LMS42_RS02030 (LMS42_002030) | rny | 431269..432804 (+) | 1536 | WP_003459753.1 | ribonuclease Y | - |
| LMS42_RS02035 (LMS42_002035) | - | 433022..433282 (+) | 261 | WP_003459803.1 | stage V sporulation protein S | - |
| LMS42_RS02040 (LMS42_002040) | - | 433434..434627 (+) | 1194 | WP_142420176.1 | pyridoxal phosphate-dependent aminotransferase | - |
| LMS42_RS02045 (LMS42_002045) | - | 434722..434982 (+) | 261 | WP_003459789.1 | HPr family phosphocarrier protein | - |
| LMS42_RS02050 (LMS42_002050) | purB | 435225..436655 (+) | 1431 | WP_197925669.1 | adenylosuccinate lyase | - |
| LMS42_RS02055 (LMS42_002055) | - | 436934..437263 (+) | 330 | WP_003459777.1 | single-stranded DNA-binding protein | - |
| LMS42_RS02060 (LMS42_002060) | - | 437300..437914 (-) | 615 | WP_003459802.1 | 3'-5' exonuclease | - |
| LMS42_RS02065 (LMS42_002065) | - | 438136..439515 (+) | 1380 | WP_003459766.1 | PhoH family protein | - |
| LMS42_RS02070 (LMS42_002070) | - | 439719..440339 (+) | 621 | WP_003459807.1 | site-2 protease family protein | - |
| LMS42_RS02075 (LMS42_002075) | - | 440505..441719 (+) | 1215 | WP_228635939.1 | CapA family protein | - |
| LMS42_RS02080 (LMS42_002080) | - | 441818..443326 (-) | 1509 | WP_003449448.1 | Ppx/GppA phosphatase family protein | - |
| LMS42_RS02085 (LMS42_002085) | argS | 443808..445505 (+) | 1698 | WP_228572416.1 | arginine--tRNA ligase | - |
| LMS42_RS02090 (LMS42_002090) | - | 445551..445700 (-) | 150 | WP_003459783.1 | FeoB-associated Cys-rich membrane protein | - |
| LMS42_RS02095 (LMS42_002095) | feoB | 445715..447478 (-) | 1764 | WP_228572414.1 | ferrous iron transport protein B | - |
| LMS42_RS02100 (LMS42_002100) | - | 447516..447734 (-) | 219 | WP_003449499.1 | FeoA family protein | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37987.39 Da Isoelectric Point: 5.0692
>NTDB_id=928460 LMS42_RS02020 WP_228571839.1 428638..429696(+) (recA) [Clostridium perfringens strain P201]
MANIDKDKLKAIEMAMGQIEKQFGKGSVMKLGEQGSPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
VVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTGEQALEITESLVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGIT
GNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALD
IENQIREKYSLPLAKAVESTSVEENTEESVES
MANIDKDKLKAIEMAMGQIEKQFGKGSVMKLGEQGSPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
VVAEAQKLGGAAAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTGEQALEITESLVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGIT
GNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALD
IENQIREKYSLPLAKAVESTSVEENTEESVES
Nucleotide
Download Length: 1059 bp
>NTDB_id=928460 LMS42_RS02020 WP_228571839.1 428638..429696(+) (recA) [Clostridium perfringens strain P201]
ATGGCAAATATAGATAAAGATAAATTAAAAGCTATTGAGATGGCTATGGGTCAAATAGAGAAGCAATTTGGAAAGGGATC
AGTAATGAAACTTGGAGAGCAAGGATCTCCTCAAATGGATGCTGTTTCTACTGGATGCTTAGATCTTGATATAGCTTTAG
GAATTGGTGGAGTACCAAAAGGAAGAATTATTGAGATATATGGACCAGAGAGTTCTGGTAAAACAACAGTGGCTTTACAT
GTAGTAGCAGAGGCACAAAAATTAGGTGGAGCAGCAGCGTATATAGATGCAGAGCATGCTTTAGATCCAGTTTATGCAAA
AAGATTAGGTGTTAATATAGATGATTTAGTAGTTTCACAACCAGATACAGGAGAACAAGCTTTAGAAATAACAGAATCTT
TAGTTAGATCAGGAGCTATAGATGTTTTAGTTGTGGACTCAGTTGCCGCTTTAGTTCCAAGAGCAGAAATTGAAGGTGAA
ATGGGAGATTCTCATGTTGGTCTTCAAGCTAGATTAATGTCACAGGCCTTAAGAAAGTTAACAGGAACAATTAACAAATC
AAACTGCGTAGTAATATTCATAAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAGACAACACCAGGTG
GTAGAGCGTTAAAATTCTATGCTTCAGTTAGAATGGATATAAGAAGAATAGATTCAATAAAACAAGGTGACGGAATAACT
GGTAATAGAACAAGAGTTAAAATAGTTAAGAATAAGGTTGCTCCTCCATTTAAGCAAGCTGAGTTTGATATAATGTACAA
TGAAGGTATATCAAAAGAAGGTAATATAGTAGACGTTGGAGTAAAAGAAAATATAGTACAAAAGAGTGGAGCTTGGTTCT
CATATGGAGATATAAGATTAGGCCAAGGTAGAGAAAATGCTAAACAATATTTAAAAGAGAATCCAGCAGTTGCTTTAGAT
ATAGAAAATCAAATAAGAGAAAAATATTCTCTTCCTTTAGCTAAGGCTGTTGAATCAACAAGTGTAGAAGAAAATACAGA
AGAGTCTGTTGAAAGCTAA
ATGGCAAATATAGATAAAGATAAATTAAAAGCTATTGAGATGGCTATGGGTCAAATAGAGAAGCAATTTGGAAAGGGATC
AGTAATGAAACTTGGAGAGCAAGGATCTCCTCAAATGGATGCTGTTTCTACTGGATGCTTAGATCTTGATATAGCTTTAG
GAATTGGTGGAGTACCAAAAGGAAGAATTATTGAGATATATGGACCAGAGAGTTCTGGTAAAACAACAGTGGCTTTACAT
GTAGTAGCAGAGGCACAAAAATTAGGTGGAGCAGCAGCGTATATAGATGCAGAGCATGCTTTAGATCCAGTTTATGCAAA
AAGATTAGGTGTTAATATAGATGATTTAGTAGTTTCACAACCAGATACAGGAGAACAAGCTTTAGAAATAACAGAATCTT
TAGTTAGATCAGGAGCTATAGATGTTTTAGTTGTGGACTCAGTTGCCGCTTTAGTTCCAAGAGCAGAAATTGAAGGTGAA
ATGGGAGATTCTCATGTTGGTCTTCAAGCTAGATTAATGTCACAGGCCTTAAGAAAGTTAACAGGAACAATTAACAAATC
AAACTGCGTAGTAATATTCATAAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAGACAACACCAGGTG
GTAGAGCGTTAAAATTCTATGCTTCAGTTAGAATGGATATAAGAAGAATAGATTCAATAAAACAAGGTGACGGAATAACT
GGTAATAGAACAAGAGTTAAAATAGTTAAGAATAAGGTTGCTCCTCCATTTAAGCAAGCTGAGTTTGATATAATGTACAA
TGAAGGTATATCAAAAGAAGGTAATATAGTAGACGTTGGAGTAAAAGAAAATATAGTACAAAAGAGTGGAGCTTGGTTCT
CATATGGAGATATAAGATTAGGCCAAGGTAGAGAAAATGCTAAACAATATTTAAAAGAGAATCCAGCAGTTGCTTTAGAT
ATAGAAAATCAAATAAGAGAAAAATATTCTCTTCCTTTAGCTAAGGCTGTTGAATCAACAAGTGTAGAAGAAAATACAGA
AGAGTCTGTTGAAAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.