Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VIN14_RS12710 Genome accession   NZ_CP143264
Coordinates   2623607..2624800 (-) Length   397 a.a.
NCBI ID   WP_025013132.1    Uniprot ID   A0AAD1ARV5
Organism   Lacticaseibacillus casei strain LC130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2618607..2629800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIN14_RS12680 (VIN14_12680) - 2618823..2619524 (-) 702 WP_025013127.1 histidine phosphatase family protein -
  VIN14_RS12685 (VIN14_12685) - 2619566..2620378 (-) 813 WP_025013128.1 Cof-type HAD-IIB family hydrolase -
  VIN14_RS12690 (VIN14_12690) - 2620474..2620956 (+) 483 WP_025013129.1 ribonuclease H -
  VIN14_RS12695 (VIN14_12695) - 2620962..2621813 (-) 852 WP_191995919.1 LysR family transcriptional regulator -
  VIN14_RS12700 (VIN14_12700) - 2621707..2622000 (+) 294 WP_191995915.1 hypothetical protein -
  VIN14_RS12705 (VIN14_12705) - 2622131..2623336 (+) 1206 WP_025013131.1 PLP-dependent aminotransferase family protein -
  VIN14_RS12710 (VIN14_12710) recA 2623607..2624800 (-) 1194 WP_025013132.1 recombinase RecA Machinery gene
  VIN14_RS12715 (VIN14_12715) - 2625276..2625974 (+) 699 WP_025013133.1 DUF554 domain-containing protein -
  VIN14_RS12720 (VIN14_12720) - 2626054..2626527 (-) 474 WP_010490873.1 hypothetical protein -
  VIN14_RS12725 (VIN14_12725) - 2627203..2629188 (-) 1986 WP_025013134.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43057.95 Da        Isoelectric Point: 5.4314

>NTDB_id=928373 VIN14_RS12710 WP_025013132.1 2623607..2624800(-) (recA) [Lacticaseibacillus casei strain LC130]
MAKKTTTKNANTKSDTTDRETELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEIYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVEIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKK
GQQVKDGKDVIGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLVTEKDSKFDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEAKIREQAAPKKPEETDDDKKDAKKDVKSTDEAKTEKPAEADEKQDDKKDDPSSFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=928373 VIN14_RS12710 WP_025013132.1 2623607..2624800(-) (recA) [Lacticaseibacillus casei strain LC130]
ATGGCGAAGAAAACGACCACAAAGAATGCAAATACAAAATCTGATACCACAGATCGCGAAACCGAATTAGAAAAGGCGCT
GCAGAAAATCAAGAAGGCGTTTGGTGAAGGCGCCGTGATGAAAATGGGTGATCGGCCGGAACTGAAGGTTGATGTTGTTT
CGACCGGCATTCTTTCACTGGACCTGGCGCTTGGTGTCGGCGGGTTGCCACGCGGCCGGATTGTGGAAATCTATGGTCCT
GAAAGTACCGGGAAAACCACGATTGCACTGCAGACGATCGCAGAGTTGCAAAAGTCCGGCGGCAAGGCAGCTTATATTGA
TGCCGAAAACGCGATGGATCCAAAGTATGCGGCTGAATTGGGGGTTAACATTGACGACCTTCTGTTATCCCAGCCAAACT
CGGGCGAACAGGGATTGGAAATTGCCGAAATGCTGATCGAATCTGCCGCCGTGGAAATTGTCGTGATTGATTCAGTTGCC
GCTTTGGTTCCCAAGGCTGAAATCGAAGGCGCCATTGGTGACAGTCATGTCGGCTTACAAGCGCGGTTAATGTCGCAAGC
ACTGCGTAAAATGGCCGGGTCGATTAACAATACCAATACATTGGTCATCTTTATCAATCAGTTGCGGGAAAAAGTCGGCG
TGATGTTTGGCAATCCGGAAGTCACACCGGGTGGACGCGCTTTGAAGTTCTATGCCTCGGTTCGTATTGAGGTTAAAAAA
GGCCAGCAAGTCAAAGATGGCAAAGATGTGATCGGTTTTGCCAGCAAGCTGAAGGTTACCAAAAACAAGGTGGCACCACC
ATTTAAGACGGTTGAAACCACGATGTCATTTGGCCATGGGATTGAGCACAACACCGACATGATCAACTTAGTGACGGAAA
AAGACAGTAAGTTTGATGTCATCACCAAGTCAGGATCCTGGTATAACTACGGCAAAGAGCGTTTAGGCCAAGGACTTGTG
AACGCCTCCCATTATCTGGATGAACATCCGGAAATTTCTAAGGAAATCGAAGCCAAAATCCGTGAACAGGCCGCACCTAA
GAAGCCTGAAGAAACGGACGACGACAAGAAGGATGCTAAAAAAGACGTCAAGTCAACTGACGAAGCCAAGACTGAAAAGC
CAGCTGAGGCCGATGAAAAGCAGGATGACAAGAAAGATGATCCATCAAGCTTTGGCGTTGATCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

57.067

94.458

0.539
  recA Streptococcus pyogenes NZ131

57.724

92.947

0.537
  recA Streptococcus pneumoniae TIGR4

56.499

94.962

0.537
  recA Streptococcus pneumoniae D39

56.499

94.962

0.537
  recA Streptococcus pneumoniae R6

56.499

94.962

0.537
  recA Streptococcus pneumoniae Rx1

56.499

94.962

0.537
  recA Streptococcus mitis SK321

56.8

94.458

0.537
  recA Streptococcus mutans UA159

56.72

93.703

0.531
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Lactococcus lactis subsp. cremoris KW2

58.601

86.398

0.506
  recA Bacillus subtilis subsp. subtilis str. 168

61.162

82.368

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.917

85.139

0.476
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.975

88.917

0.471
  recA Glaesserella parasuis strain SC1401

54.36

86.65

0.471
  recA Pseudomonas stutzeri DSM 10701

57.099

81.612

0.466
  recA Acinetobacter baylyi ADP1

54.925

84.383

0.463
  recA Ralstonia pseudosolanacearum GMI1000

58.28

79.093

0.461
  recA Neisseria gonorrhoeae MS11

57.962

79.093

0.458
  recA Neisseria gonorrhoeae strain FA1090

57.962

79.093

0.458
  recA Neisseria gonorrhoeae MS11

57.962

79.093

0.458
  recA Acinetobacter baumannii D1279779

55.763

80.856

0.451
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.231

81.864

0.436
  recA Vibrio cholerae strain A1552

53.231

81.864

0.436
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.231

81.864

0.436
  recA Helicobacter pylori strain NCTC11637

52.147

82.116

0.428
  recA Helicobacter pylori 26695

52.147

82.116

0.428