Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VXM67_RS20905 Genome accession   NZ_CP142890
Coordinates   4572815..4573882 (-) Length   355 a.a.
NCBI ID   WP_023381942.1    Uniprot ID   A0A964M159
Organism   Pseudomonas sp. Rh2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4567815..4578882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM67_RS20870 (VXM67_20830) - 4568031..4568402 (-) 372 WP_177325252.1 diacylglycerol kinase -
  VXM67_RS20875 (VXM67_20835) erdR 4568467..4569117 (-) 651 WP_023381936.1 response regulator transcription factor ErdR -
  VXM67_RS20880 (VXM67_20840) - 4569297..4570007 (-) 711 WP_367237351.1 tRNA-uridine aminocarboxypropyltransferase -
  VXM67_RS20885 (VXM67_20845) - 4570231..4570650 (+) 420 WP_023381938.1 quorum-sensing-regulated virulence factor family protein -
  VXM67_RS20890 (VXM67_20850) - 4570651..4570854 (-) 204 WP_023381939.1 hypothetical protein -
  VXM67_RS20895 (VXM67_20855) - 4571160..4572278 (+) 1119 WP_023381940.1 LOG family protein -
  VXM67_RS20900 (VXM67_20860) recX 4572336..4572806 (-) 471 WP_023381941.1 recombination regulator RecX -
  VXM67_RS20905 (VXM67_20865) recA 4572815..4573882 (-) 1068 WP_023381942.1 recombinase RecA Machinery gene
  VXM67_RS20910 (VXM67_20870) - 4573985..4574467 (-) 483 WP_023381943.1 CinA family protein -
  VXM67_RS20915 (VXM67_20875) mutS 4574632..4577205 (+) 2574 WP_023381944.1 DNA mismatch repair protein MutS -
  VXM67_RS20920 (VXM67_20880) fdxA 4577346..4577669 (+) 324 WP_004375459.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37557.89 Da        Isoelectric Point: 5.3117

>NTDB_id=927488 VXM67_RS20905 WP_023381942.1 4572815..4573882(-) (recA) [Pseudomonas sp. Rh2]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKFLQENPAVGAEIEK
QIREKLLNAGAVAAAGKAAAAEADADDMADADAGY

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=927488 VXM67_RS20905 WP_023381942.1 4572815..4573882(-) (recA) [Pseudomonas sp. Rh2]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAAATCGAACGCCAATTCGGCAAAGGTGCCGTCATGCG
CATGGGCGACCATGAGCGTCAGGCCATCCCCGCTATCTCCACCGGCTCCCTGGGCCTGGACATCGCCCTTGGCATCGGCG
GTCTGCCGAAAGGTCGTATCGTCGAAATCTACGGTCCGGAATCGTCGGGTAAGACGACCCTGACTCTGTCGGTTATCGCC
GAAGCCCAGAAGAACGGCGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTCCTGGTCTCGCAGCCAGACACCGGTGAACAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCGTTGACGTGATCATCGTCGACTCCGTTGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCCCTGCGTAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAGCCCTGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTATGCTTCTGTGCGTCTGGACATCCGCCGTACCGGCGCTGTCAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCTCCTCCGTTCCGCCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCGCAACGGTGAAATCATTGACCTGGGTGTTTCCCAAGGCCTGGTGGAAAAATCCGGTGCGTGGTACAGCTACCAGG
GCAACAAGATTGGCCAGGGCAAGGCTAACGCCGCCAAGTTCCTGCAAGAGAACCCGGCCGTTGGCGCTGAGATCGAGAAG
CAAATTCGCGAGAAACTGCTGAACGCAGGTGCTGTTGCTGCAGCAGGCAAGGCCGCTGCTGCCGAGGCTGACGCCGACGA
TATGGCCGACGCCGACGCCGGTTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.92

99.155

0.882
  recA Acinetobacter baylyi ADP1

76.524

92.394

0.707
  recA Acinetobacter baumannii D1279779

74.551

94.085

0.701
  recA Vibrio cholerae strain A1552

70.809

97.465

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.809

97.465

0.69
  recA Glaesserella parasuis strain SC1401

69.143

98.592

0.682
  recA Ralstonia pseudosolanacearum GMI1000

71.642

94.366

0.676
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.393

94.648

0.6
  recA Helicobacter pylori strain NCTC11637

63.609

92.113

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.085

0.58
  recA Helicobacter pylori 26695

62.997

92.113

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.934

93.239

0.577
  recA Streptococcus pyogenes NZ131

55.182

100

0.555
  recA Streptococcus mutans UA159

55.682

99.155

0.552
  recA Streptococcus mitis SK321

55.908

97.746

0.546
  recA Streptococcus mitis NCTC 12261

55.62

97.746

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

90.423

0.535
  recA Streptococcus pneumoniae Rx1

58.282

91.831

0.535
  recA Streptococcus pneumoniae D39

58.282

91.831

0.535
  recA Streptococcus pneumoniae R6

58.282

91.831

0.535
  recA Streptococcus pneumoniae TIGR4

58.282

91.831

0.535
  recA Lactococcus lactis subsp. cremoris KW2

56.966

90.986

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.521

91.831

0.51