Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VJ374_RS05395 Genome accession   NZ_CP142850
Coordinates   1045510..1046553 (+) Length   347 a.a.
NCBI ID   WP_023467702.1    Uniprot ID   A0A031IJK9
Organism   Exiguobacterium sp. 9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1040510..1051553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ374_RS05370 (VJ374_05370) - 1040943..1041647 (+) 705 WP_056060433.1 SDR family oxidoreductase -
  VJ374_RS05375 (VJ374_05375) - 1041742..1042524 (+) 783 WP_023467698.1 DUF3388 domain-containing protein -
  VJ374_RS05380 (VJ374_05380) - 1042534..1043451 (+) 918 WP_308101230.1 helix-turn-helix domain-containing protein -
  VJ374_RS05385 (VJ374_05385) pgsA 1043516..1044094 (+) 579 WP_056060438.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VJ374_RS05390 (VJ374_05390) - 1044166..1045398 (+) 1233 WP_329470432.1 competence/damage-inducible protein A -
  VJ374_RS05395 (VJ374_05395) recA 1045510..1046553 (+) 1044 WP_023467702.1 recombinase RecA Machinery gene
  VJ374_RS05400 (VJ374_05400) rny 1046747..1048309 (+) 1563 WP_023467703.1 ribonuclease Y -
  VJ374_RS05405 (VJ374_05405) - 1048359..1049153 (+) 795 WP_035408850.1 TIGR00282 family metallophosphoesterase -
  VJ374_RS05410 (VJ374_05410) - 1049183..1049443 (+) 261 WP_023467705.1 stage V sporulation protein S -
  VJ374_RS05415 (VJ374_05415) - 1049635..1051383 (+) 1749 WP_056060443.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37560.78 Da        Isoelectric Point: 5.0854

>NTDB_id=927359 VJ374_RS05395 WP_023467702.1 1045510..1046553(+) (recA) [Exiguobacterium sp. 9-2]
MSDRKAALEMALRQIEKQFGKGSIMKLGENADQKVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDVVGNKT
KIKVVKNKIAPPFKQAEVDIMYGLGISKVGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENAKQYMVEHPEVAAEVERL
IREHHGLVDREEPVDFEAEQPEDLFAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=927359 VJ374_RS05395 WP_023467702.1 1045510..1046553(+) (recA) [Exiguobacterium sp. 9-2]
GTGAGTGATCGTAAAGCAGCACTTGAGATGGCGTTACGCCAGATAGAGAAACAGTTCGGTAAAGGTTCCATCATGAAACT
CGGAGAAAATGCGGATCAGAAGGTATCAGTGATCTCTTCTGGATCGATTACATTAGATATTGCCCTAGGTGCAGGTGGAT
ACCCACGTGGACGGGTCATCGAAGTATACGGACCTGAATCGTCAGGTAAAACGACGGTAGCGCTTCATGCAATCGCAGAA
GTTCAAAAACAAGGTGGACAAGCAGCATTCATCGATGCAGAGCACGCGCTTGATCCAGCATACGCAAATAAACTCGGTGT
CAACATCGATGAGCTCCTCTTGTCACAACCGGATACTGGGGAGCAGGCACTTGAAATTGCGGAAGCACTCGTTCGTTCTG
GTGCGGTCGATATTCTTGTCGTCGACTCTGTTGCGGCACTCGTACCAAAAGCAGAGATTGAAGGCGAGATGGGTGACTCA
CACGTCGGTCTTCAAGCGCGTTTGATGAGCCAAGCGCTTCGTAAGTTGTCTGGTGCAACGAATAAATCGAAAACGATCGT
CATCTTCATCAACCAAATCCGTGAAAAAATCGGTGTTATGTTTGGTAACCCGGAAACGACTCCAGGTGGTCGAGCACTCA
AATTCTACTCGTCTGTTCGTTTAGAAGTGCGTCGTGCGGAAGCGTTGAAAAACGGTACGGACGTCGTCGGTAACAAAACG
AAGATCAAGGTTGTCAAAAACAAAATTGCTCCTCCGTTTAAACAAGCAGAAGTTGATATCATGTACGGTCTCGGTATTTC
GAAGGTCGGTGAGTTGATCGACATCGGAACGGATCTGGATATCGTTCAAAAGAGTGGTGCATGGTATTCGTACAACTCAG
AGCGTCTTGGTCAAGGGCGTGAGAACGCGAAGCAATACATGGTCGAGCATCCGGAAGTCGCAGCAGAGGTCGAACGTTTG
ATTCGTGAACATCACGGTCTCGTCGATCGCGAAGAGCCGGTTGATTTCGAAGCAGAACAACCAGAAGATCTATTTGCTGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031IJK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.18

94.236

0.784
  recA Latilactobacillus sakei subsp. sakei 23K

73.939

95.101

0.703
  recA Streptococcus pneumoniae Rx1

68.497

99.712

0.683
  recA Streptococcus pneumoniae D39

68.497

99.712

0.683
  recA Streptococcus pneumoniae R6

68.497

99.712

0.683
  recA Streptococcus pneumoniae TIGR4

68.497

99.712

0.683
  recA Streptococcus mitis SK321

70.149

96.542

0.677
  recA Streptococcus mitis NCTC 12261

69.552

96.542

0.671
  recA Streptococcus pyogenes NZ131

69.817

94.524

0.66
  recA Streptococcus mutans UA159

67.964

96.254

0.654
  recA Lactococcus lactis subsp. cremoris KW2

67.164

96.542

0.648
  recA Acinetobacter baumannii D1279779

62.899

99.424

0.625
  recA Neisseria gonorrhoeae strain FA1090

65.046

94.813

0.617
  recA Neisseria gonorrhoeae MS11

65.046

94.813

0.617
  recA Neisseria gonorrhoeae MS11

65.046

94.813

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

92.507

0.617
  recA Vibrio cholerae strain A1552

66.667

92.507

0.617
  recA Acinetobacter baylyi ADP1

64.308

93.66

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.202

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Pseudomonas stutzeri DSM 10701

64.062

92.219

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

93.948

0.585
  recA Helicobacter pylori strain NCTC11637

61.846

93.66

0.579
  recA Glaesserella parasuis strain SC1401

62.696

91.931

0.576
  recA Helicobacter pylori 26695

61.538

93.66

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

91.066

0.568