Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | MWL96_RS07045 | Genome accession | NZ_AP025558 |
| Coordinates | 1483863..1484909 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CE91-St50 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1458349..1520125 | 1483863..1484909 | within | 0 |
Gene organization within MGE regions
Location: 1458349..1520125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWL96_RS06940 (CE91St50_13150) | rimP | 1462097..1462558 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| MWL96_RS06945 (CE91St50_13160) | nusA | 1462588..1463742 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| MWL96_RS06950 (CE91St50_13170) | rnpM | 1463749..1464030 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| MWL96_RS06955 (CE91St50_13180) | - | 1464020..1464331 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| MWL96_RS06960 (CE91St50_13190) | infB | 1464353..1466293 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| MWL96_RS06965 (CE91St50_13200) | rbfA | 1466336..1466716 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| MWL96_RS06970 (CE91St50_13210) | - | 1466697..1467680 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| MWL96_RS06975 (CE91St50_13220) | truB | 1467693..1468598 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| MWL96_RS06980 (CE91St50_13230) | - | 1468729..1469658 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| MWL96_RS06985 (CE91St50_13240) | rpsO | 1469762..1470019 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| MWL96_RS06990 (CE91St50_13250) | - | 1470259..1471110 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| MWL96_RS06995 (CE91St50_13260) | pnp | 1471235..1473346 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| MWL96_RS07000 (CE91St50_13270) | - | 1473612..1474355 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| MWL96_RS07005 (CE91St50_13280) | - | 1474513..1475760 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| MWL96_RS07010 (CE91St50_13290) | - | 1475795..1476040 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| MWL96_RS07015 (CE91St50_13300) | dapG | 1476050..1477273 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| MWL96_RS07020 (CE91St50_13310) | - | 1477386..1478120 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| MWL96_RS07025 (CE91St50_13320) | - | 1478243..1480657 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| MWL96_RS07030 (CE91St50_13330) | mnmH | 1480660..1481718 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| MWL96_RS07035 (CE91St50_13340) | rimO | 1481712..1483046 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| MWL96_RS07040 (CE91St50_13350) | pgsA | 1483033..1483575 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| MWL96_RS07045 (CE91St50_13360) | recA | 1483863..1484909 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| MWL96_RS07050 (CE91St50_13370) | rny | 1485085..1486626 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| MWL96_RS07055 (CE91St50_13380) | - | 1487261..1489042 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| MWL96_RS07060 (CE91St50_13390) | lepB | 1489124..1489654 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| MWL96_RS07065 (CE91St50_13400) | - | 1489694..1490518 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| MWL96_RS07070 (CE91St50_13410) | - | 1490775..1491683 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| MWL96_RS07075 (CE91St50_13420) | purB | 1491827..1493272 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| MWL96_RS07080 (CE91St50_13430) | - | 1493583..1494035 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| MWL96_RS07085 (CE91St50_13440) | - | 1494439..1496016 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| MWL96_RS07090 (CE91St50_13450) | - | 1496164..1496916 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| MWL96_RS07095 (CE91St50_13460) | - | 1497055..1498416 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| MWL96_RS07100 (CE91St50_13470) | - | 1498507..1499703 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| MWL96_RS07105 (CE91St50_13480) | galT | 1500088..1501038 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| MWL96_RS07110 (CE91St50_13490) | - | 1501191..1501943 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| MWL96_RS07115 (CE91St50_13500) | - | 1502035..1502811 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| MWL96_RS07120 (CE91St50_13510) | - | 1503126..1505024 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| MWL96_RS07125 (CE91St50_13520) | - | 1505152..1506273 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| MWL96_RS07130 (CE91St50_13530) | - | 1506472..1506804 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| MWL96_RS07135 (CE91St50_13540) | - | 1506791..1507849 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| MWL96_RS07140 (CE91St50_13550) | - | 1507842..1508912 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| MWL96_RS07145 (CE91St50_13560) | - | 1509014..1509550 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| MWL96_RS07150 (CE91St50_13570) | - | 1509666..1510373 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| MWL96_RS07155 (CE91St50_13580) | - | 1510375..1511091 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| MWL96_RS07160 (CE91St50_13590) | - | 1511093..1511851 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| MWL96_RS07165 (CE91St50_13600) | - | 1511986..1513374 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| MWL96_RS07170 (CE91St50_13610) | - | 1513450..1514271 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| MWL96_RS07175 (CE91St50_13620) | - | 1514522..1515676 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| MWL96_RS07180 (CE91St50_13630) | - | 1515859..1516059 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| MWL96_RS07185 (CE91St50_13640) | - | 1516480..1516908 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| MWL96_RS07190 (CE91St50_13650) | - | 1517051..1517806 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| MWL96_RS07195 (CE91St50_13660) | - | 1517927..1518343 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| MWL96_RS07200 (CE91St50_13670) | - | 1518507..1519013 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| MWL96_RS07205 (CE91St50_13680) | - | 1519095..1519415 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| MWL96_RS07210 (CE91St50_13690) | - | 1519584..1519781 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=92706 MWL96_RS07045 WP_003428218.1 1483863..1484909(+) (recA) [Clostridioides difficile strain CE91-St50]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=92706 MWL96_RS07045 WP_003428218.1 1483863..1484909(+) (recA) [Clostridioides difficile strain CE91-St50]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.