Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VJ143_RS12230 Genome accession   NZ_CP142740
Coordinates   2615938..2616981 (+) Length   347 a.a.
NCBI ID   WP_004719755.1    Uniprot ID   A0A077L0H5
Organism   Acinetobacter guillouiae strain 13-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2610938..2621981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS12210 (VJ143_12215) - 2612274..2612714 (-) 441 WP_327857271.1 hypothetical protein -
  VJ143_RS12215 (VJ143_12220) - 2613857..2614042 (+) 186 WP_327857272.1 hypothetical protein -
  VJ143_RS12220 (VJ143_12225) - 2614650..2615354 (+) 705 WP_327857273.1 HAD-IA family hydrolase -
  VJ143_RS12225 (VJ143_12230) - 2615338..2615778 (+) 441 WP_327857274.1 RNA-binding S4 domain-containing protein -
  VJ143_RS12230 (VJ143_12235) recA 2615938..2616981 (+) 1044 WP_004719755.1 recombinase RecA Machinery gene
  VJ143_RS12235 (VJ143_12240) - 2617228..2619747 (-) 2520 WP_327857275.1 PEP/pyruvate-binding domain-containing protein -
  VJ143_RS12240 (VJ143_12245) - 2619875..2620711 (-) 837 WP_327857276.1 phosphatase PAP2 family protein -
  VJ143_RS12245 (VJ143_12250) - 2620748..2621854 (-) 1107 WP_327857277.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37588.08 Da        Isoelectric Point: 5.1559

>NTDB_id=926649 VJ143_RS12230 WP_004719755.1 2615938..2616981(+) (recA) [Acinetobacter guillouiae strain 13-3]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAVDMIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQIMYGKGVNHLGELVDLAVGQELVQKAGAWYSYQGDKIGQGKNNVIRHLEENPQLAQELDR
MIREKLLTTANAAPAEEKEEEPDFLDV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=926649 VJ143_RS12230 WP_004719755.1 2615938..2616981(+) (recA) [Acinetobacter guillouiae strain 13-3]
ATGGATGATAACAAAAGCAAGGCACTGAATGCGGCACTGAGCCAAATTGAGAAACAATTTGGTAAAAACACAGTGATGCG
CTTAGGTGATAACACTGTTCAAGCGGTTGAAGCGGTCTCTACAGGCTCTTTAACACTTGATATTGCATTGGGTATTGGGG
GCTTACCAAAAGGTCGTATCGTTGAAATTTACGGTCCTGAATCTTCTGGTAAAACAACAATGACGCTACAAGCCATTGCG
CAATGCCAAAAAGCAGGTGGAACATGTGCCTTTATTGATGCGGAACATGCTTTAGATCCACAATATGCACGTAAACTTGG
GGTAGATATAGACAACCTTTTAGTTTCACAGCCAGATAATGGTGAGCAAGCACTTGAAATCGCAGATATGTTGGTTCGTT
CAGGTGCAGTCGATATGATCGTTGTCGATTCTGTAGCAGCGTTAACCCCTAAAGCCGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGGCTACAAGCACGTTTGATGAGCCAAGCTTTACGTAAAATCACAGGTAATGCCAAGCGCTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGGGTGATGTTTGGTAGCCCTGAAACCACAACTGGTGGTAACGCAT
TGAAGTTCTATGCTTCTGTACGTTTAGATATTCGTCGTATTGGACAAGTTAAAGAAGGCGATGAAATTGTAGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAAAACAAAATGGCGCCTCCTTTCCGTGAAGCACTTTTCCAAATTATGTATGGTAAAGGTGT
AAATCACTTAGGTGAATTGGTTGATCTTGCAGTTGGACAAGAACTTGTACAAAAAGCAGGTGCTTGGTACTCATATCAAG
GCGACAAAATCGGTCAAGGTAAAAACAATGTCATTCGACATTTAGAGGAAAACCCTCAATTGGCTCAAGAGCTTGATCGT
ATGATTCGTGAAAAGCTTTTGACTACTGCTAATGCCGCACCAGCAGAAGAGAAAGAAGAAGAGCCTGACTTTTTAGATGT
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077L0H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

90.805

100

0.911
  recA Acinetobacter baumannii D1279779

90.751

99.712

0.905
  recA Pseudomonas stutzeri DSM 10701

73.487

100

0.735
  recA Vibrio cholerae strain A1552

74.32

95.389

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.32

95.389

0.709
  recA Glaesserella parasuis strain SC1401

70.058

99.135

0.695
  recA Ralstonia pseudosolanacearum GMI1000

71.037

94.524

0.671
  recA Neisseria gonorrhoeae MS11

68.519

93.372

0.64
  recA Neisseria gonorrhoeae MS11

68.519

93.372

0.64
  recA Neisseria gonorrhoeae strain FA1090

68.519

93.372

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.389

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.281

98.559

0.614
  recA Helicobacter pylori strain NCTC11637

62.09

96.542

0.599
  recA Helicobacter pylori 26695

61.791

96.542

0.597
  recA Streptococcus mitis NCTC 12261

58.96

99.712

0.588
  recA Streptococcus mitis SK321

59.531

98.271

0.585
  recA Streptococcus pyogenes NZ131

61.89

94.524

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

92.219

0.579
  recA Streptococcus pneumoniae Rx1

61.656

93.948

0.579
  recA Streptococcus pneumoniae D39

61.656

93.948

0.579
  recA Streptococcus pneumoniae R6

61.656

93.948

0.579
  recA Streptococcus pneumoniae TIGR4

61.656

93.948

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mutans UA159

61.231

93.66

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545