Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VDS59_RS04165 Genome accession   NZ_CP142716
Coordinates   871711..872844 (+) Length   377 a.a.
NCBI ID   WP_043023201.1    Uniprot ID   A0AAJ5K5K5
Organism   Levilactobacillus brevis strain A156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 872960..874222 871711..872844 flank 116


Gene organization within MGE regions


Location: 871711..874222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS59_RS04165 (VDS59_04165) recA 871711..872844 (+) 1134 WP_043023201.1 recombinase RecA Machinery gene
  VDS59_RS04170 (VDS59_04170) - 872960..874222 (-) 1263 WP_221091689.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40350.74 Da        Isoelectric Point: 5.3901

>NTDB_id=926541 VDS59_RS04165 WP_043023201.1 871711..872844(+) (recA) [Levilactobacillus brevis strain A156]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVGDEEAAATKATETKTDAPKDKDKGKTKAKDKPADVTPGQIELAPDKSTK

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=926541 VDS59_RS04165 WP_043023201.1 871711..872844(+) (recA) [Levilactobacillus brevis strain A156]
ATGGCTGACGAACGACAAGCGGCGCTGGATAAAGCGCTGAAGAAGATTGAAAAAGACTTTGGTAAAGGCTCGATTATGCG
ATTAGGGGACAATAGTAACCTCGAAGTTGAGACCGTACCATCAGGCTCGTTAGCACTTGACGTTGCCTTGGGTGTCGGCG
GTTACCCTCGCGGACGGATTGTAGAAATTTATGGTCCAGAATCTTCTGGGAAGACGACCGTTGCTCTGCACGCAGTTGCC
GAGGTCCAAAAACGTGGTGGAACAGCCGCCTATATTGATGCTGAAAATGCGTTGGATCCAGCCTATGCAACGGCATTAGG
GGTTAACATTGATGATTTATTGCTGTCACAGCCAGATACTGGGGAACAAGGCTTGCAAATCGCTGATGCCTTGATTTCCA
GTGGTGCGATTGACATTGTCGTGGTTGATTCCGTGGCAGCCTTAGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTGGGTCTGCAAGCCCGGTTGATGTCACAAGCCTTACGGAAGCTATCTGGGACTATCAATAAAACGAAGACAAT
CGCGTTATTTATCAATCAGATTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAGACCACACCAGGTGGCCGGGCAC
TGAAATTCTATGCGACAGTGCGGTTAGAGGTACGACGGGCCGAACAGATTAAAGATGGCACGGATGTTATCGGTAACCGG
ACGCGAATCAAGGTCGTTAAGAACAAGGTTGCGCCGCCATTTAAACGGGCCGAGGTTGATATCATGTACGGGCAAGGAAT
CTCACAAACCGGTGAATTGCTCGACATGGCGGTTGAAAAAGATATCGTTGATAAAAGCGGTTCTTGGTATTCTTATGGTG
AAGACCGAATTGGTCAGGGTCGAGAGAATGCTAAACAGTACTTGGCAGATCATCCAGATATGATGGCCGAAGTTAATCAA
CGTGTCCGGGCTGCTTACGGTGTTGGCGATGAAGAAGCCGCAGCGACTAAAGCAACTGAGACGAAGACTGATGCGCCTAA
AGACAAGGATAAAGGGAAGACAAAGGCTAAAGATAAACCGGCCGATGTTACTCCTGGTCAGATTGAGTTAGCACCAGACA
AATCAACTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.908

92.308

0.775
  recA Bacillus subtilis subsp. subtilis str. 168

75.61

87.003

0.658
  recA Streptococcus pneumoniae D39

68.946

93.103

0.642
  recA Streptococcus pneumoniae R6

68.946

93.103

0.642
  recA Streptococcus pneumoniae TIGR4

68.946

93.103

0.642
  recA Streptococcus pneumoniae Rx1

68.946

93.103

0.642
  recA Streptococcus mitis SK321

70.554

90.981

0.642
  recA Streptococcus mitis NCTC 12261

70.175

90.716

0.637
  recA Streptococcus mutans UA159

66.947

94.695

0.634
  recA Streptococcus pyogenes NZ131

70.997

87.798

0.623
  recA Lactococcus lactis subsp. cremoris KW2

69.94

89.125

0.623
  recA Neisseria gonorrhoeae MS11

60.057

92.308

0.554
  recA Neisseria gonorrhoeae MS11

60.057

92.308

0.554
  recA Neisseria gonorrhoeae strain FA1090

60.057

92.308

0.554
  recA Ralstonia pseudosolanacearum GMI1000

62.918

87.268

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.424

87.533

0.546
  recA Vibrio cholerae strain A1552

62.539

85.676

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

85.676

0.536
  recA Pseudomonas stutzeri DSM 10701

57.971

91.512

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

86.737

0.531
  recA Acinetobacter baylyi ADP1

61.61

85.676

0.528
  recA Acinetobacter baumannii D1279779

60.681

85.676

0.52
  recA Glaesserella parasuis strain SC1401

60.125

85.146

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

87.268

0.509
  recA Helicobacter pylori 26695

56.97

87.533

0.499
  recA Helicobacter pylori strain NCTC11637

56.97

87.533

0.499