Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VIJ98_RS15195 Genome accession   NZ_CP142688
Coordinates   3283310..3284380 (-) Length   356 a.a.
NCBI ID   WP_008104515.1    Uniprot ID   -
Organism   Pantoea sp. S18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3278310..3289380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIJ98_RS15180 (VIJ98_15170) csrA 3279481..3279666 (-) 186 WP_008104508.1 carbon storage regulator CsrA -
  VIJ98_RS15185 (VIJ98_15175) alaS 3279916..3282543 (-) 2628 WP_154155467.1 alanine--tRNA ligase -
  VIJ98_RS15190 (VIJ98_15180) - 3282679..3283134 (-) 456 WP_154155465.1 regulatory protein RecX -
  VIJ98_RS15195 (VIJ98_15185) recA 3283310..3284380 (-) 1071 WP_008104515.1 recombinase RecA Machinery gene
  VIJ98_RS15200 (VIJ98_15190) pncC 3284473..3284967 (-) 495 WP_154155463.1 nicotinamide-nucleotide amidase -
  VIJ98_RS15205 (VIJ98_15195) tam 3285070..3285846 (-) 777 WP_154155461.1 trans-aconitate 2-methyltransferase -
  VIJ98_RS15210 (VIJ98_15200) - 3286013..3286900 (+) 888 WP_154155459.1 dihydrodipicolinate synthase family protein -
  VIJ98_RS15215 (VIJ98_15205) - 3286933..3287268 (-) 336 WP_061719946.1 zinc ribbon domain-containing protein YjdM -
  VIJ98_RS15220 (VIJ98_15210) mltB 3287354..3288436 (-) 1083 WP_061719945.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38126.57 Da        Isoelectric Point: 4.9704

>NTDB_id=926441 VIJ98_RS15195 WP_008104515.1 3283310..3284380(-) (recA) [Pantoea sp. S18]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGEKIGQGKANSTNFLKENPAIANEI
DKKLRDLLLSGEVAAADTAKISADDREEASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=926441 VIJ98_RS15195 WP_008104515.1 3283310..3284380(-) (recA) [Pantoea sp. S18]
ATGGCGATCGACGAGAACAAACAGAAGGCTTTAGCTGCCGCACTGGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTCGAAACCATCTCTACCGGCTCACTGTCACTGGATATCGCGCTGGGAG
CGGGTGGCTTGCCGATGGGACGTATCGTTGAGATTTACGGACCGGAGTCTTCGGGTAAAACCACGCTGACGCTGCAGGTT
ATTGCTTCTGCACAGCGCAAAGGCAAAACCTGTGCCTTTATCGATGCCGAGCATGCACTGGATCCGGTATACGCGAAAAA
ACTGGGCGTTGATATCGATAACCTGCTGTGTTCACAGCCGGATACCGGTGAGCAAGCGCTGGAGATTTGTGATGCGCTGG
CGCGTTCAGGCGCGGTTGACGTCATCATCGTCGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGAGAGATC
GGCGATTCACACATGGGTCTGGCCGCTCGTATGATGAGCCAGGCAATGCGTAAGCTGGCTGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGCGGTA
ACGCGCTGAAATTCTACGCTTCTGTTCGTCTGGATATCCGCCGTATCGGTGCGATTAAAGAGGGCGACGAAGTGGTCGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATTGCGGCACCGTTTAAGCAGGCTGAATTCCAAATCATGTACGGTGA
AGGTATCAACACCTTTGGCGAGCTGGTGGATCTTGGCGTGAAGCATAAGCTGGTTGAGAAAGCCGGTGCGTGGTACAGCT
ACAACGGTGAGAAGATTGGTCAGGGTAAAGCTAACTCCACCAACTTCCTCAAAGAGAACCCGGCGATTGCGAATGAGATC
GACAAGAAGCTGCGTGACTTGCTGCTAAGTGGTGAAGTCGCCGCCGCAGACACCGCGAAAATCTCCGCTGATGATCGCGA
AGAGGCCAGCGAAACTAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.638

99.438

0.812
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.638

99.438

0.812
  recA Pseudomonas stutzeri DSM 10701

74.107

94.382

0.699
  recA Acinetobacter baylyi ADP1

71.304

96.91

0.691
  recA Acinetobacter baumannii D1279779

73.78

92.135

0.68
  recA Glaesserella parasuis strain SC1401

67.521

98.596

0.666
  recA Neisseria gonorrhoeae MS11

69.018

91.573

0.632
  recA Neisseria gonorrhoeae MS11

69.018

91.573

0.632
  recA Neisseria gonorrhoeae strain FA1090

69.018

91.573

0.632
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.36

0.621
  recA Streptococcus pneumoniae Rx1

59.155

99.719

0.59
  recA Streptococcus pneumoniae TIGR4

59.155

99.719

0.59
  recA Streptococcus pneumoniae R6

59.155

99.719

0.59
  recA Streptococcus pneumoniae D39

59.155

99.719

0.59
  recA Helicobacter pylori strain NCTC11637

62.162

93.539

0.581
  recA Streptococcus mitis NCTC 12261

58.64

99.157

0.581
  recA Streptococcus mitis SK321

61.493

94.101

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.385

91.292

0.579
  recA Helicobacter pylori 26695

61.862

93.539

0.579
  recA Lactococcus lactis subsp. cremoris KW2

60.896

94.101

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Streptococcus mutans UA159

62.154

91.292

0.567
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.292

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.258

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

91.854

0.542