Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VOI35_RS01605 Genome accession   NZ_CP142685
Coordinates   317032..318084 (-) Length   350 a.a.
NCBI ID   WP_407276157.1    Uniprot ID   -
Organism   Halothiobacillus sp. DCM-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 312032..323084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI35_RS01585 (VOI35_01580) csrA 312176..312385 (-) 210 WP_407276153.1 carbon storage regulator CsrA -
  VOI35_RS01590 (VOI35_01585) - 312462..313694 (-) 1233 WP_407276154.1 aspartate kinase -
  VOI35_RS01595 (VOI35_01590) alaS 313839..316457 (-) 2619 WP_407276155.1 alanine--tRNA ligase -
  VOI35_RS01600 (VOI35_01595) - 316553..317026 (-) 474 WP_407276156.1 regulatory protein RecX -
  VOI35_RS01605 (VOI35_01600) recA 317032..318084 (-) 1053 WP_407276157.1 recombinase RecA Machinery gene
  VOI35_RS01610 (VOI35_01605) - 318127..319302 (-) 1176 WP_407276158.1 pyridoxal phosphate-dependent aminotransferase -
  VOI35_RS01615 (VOI35_01610) rlmB 319377..320165 (-) 789 WP_407276159.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  VOI35_RS01620 (VOI35_01615) rnr 320162..322510 (-) 2349 WP_407276160.1 ribonuclease R -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37542.83 Da        Isoelectric Point: 6.0649

>NTDB_id=926406 VOI35_RS01605 WP_407276157.1 317032..318084(-) (recA) [Halothiobacillus sp. DCM-1]
MDENRKKALSAALSQIERQFGKGAVMRMNDTAGVDVPVVSTGSIALDHALGIGGLPRGRVIEIYGPESSGKTTLTLQVIA
QAQKTGGVCAFVDAEHALDPTYAQKLGVNVDDLLVSQPDTGEQALEITDMLVRSGAVDVVVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKRTNCMVIFINQIRMKIGVSYGSPETTTGGNALKFYASVRLDIRRVGSVKKGEEAIGNQ
TRIKVVKNKLAPPFKVVDVDILYGEGISRLMELIDLATDHGLIQKAGAWYSCGDIRLGQGKDNARQYFVEHPELADDIEA
KLRELLRNGGTQTKRKTSAASDDDTPAADD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=926406 VOI35_RS01605 WP_407276157.1 317032..318084(-) (recA) [Halothiobacillus sp. DCM-1]
ATGGACGAAAATCGCAAAAAAGCCTTGAGCGCCGCCCTCAGCCAGATCGAACGGCAATTTGGCAAAGGCGCGGTGATGCG
CATGAACGACACGGCCGGGGTCGATGTCCCGGTGGTCAGCACCGGCTCGATCGCGCTGGATCACGCCCTAGGGATTGGCG
GTTTACCGCGCGGTCGCGTGATCGAGATCTACGGCCCGGAATCTTCCGGCAAAACCACCCTCACGCTGCAAGTGATCGCC
CAGGCACAAAAAACCGGAGGCGTTTGTGCCTTCGTGGATGCCGAACACGCGCTCGATCCGACCTACGCACAAAAGCTCGG
CGTCAATGTCGATGATCTACTGGTCAGCCAACCCGACACGGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGGT
CTGGCGCGGTCGATGTCGTCGTGGTCGATTCCGTGGCCGCACTGGTGCCCAAGGCGGAAATCGAAGGCGAAATGGGCGAC
TCGCATGTCGGCCTGCAAGCCCGCCTGATGAGTCAGGCTCTGCGCAAACTGACCGGCAACATCAAACGCACCAACTGCAT
GGTGATTTTCATCAACCAGATTCGCATGAAAATCGGCGTCAGCTATGGCAGCCCGGAAACCACGACCGGCGGTAACGCGC
TCAAATTTTACGCCTCCGTCCGCCTCGATATCCGCCGTGTCGGCTCCGTGAAAAAAGGCGAAGAAGCCATCGGCAACCAG
ACCCGGATCAAGGTCGTCAAAAACAAGCTCGCGCCGCCCTTCAAGGTGGTGGATGTCGATATTCTTTATGGTGAGGGCAT
CTCTCGCCTGATGGAACTGATTGATCTCGCCACCGATCACGGCCTCATCCAGAAAGCGGGCGCCTGGTATTCCTGTGGCG
ATATTCGCCTCGGCCAGGGCAAAGACAACGCCCGCCAATACTTCGTCGAGCACCCCGAATTGGCCGATGACATCGAAGCC
AAGCTGCGCGAGCTGTTGCGCAACGGCGGCACGCAGACCAAGCGCAAAACCAGCGCCGCCAGCGACGACGACACCCCCGC
CGCTGACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.429

100

0.694
  recA Acinetobacter baylyi ADP1

68

100

0.68
  recA Acinetobacter baumannii D1279779

71.299

94.571

0.674
  recA Vibrio cholerae strain A1552

68.023

98.286

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.023

98.286

0.669
  recA Glaesserella parasuis strain SC1401

66.472

98

0.651
  recA Neisseria gonorrhoeae MS11

69.325

93.143

0.646
  recA Neisseria gonorrhoeae MS11

69.325

93.143

0.646
  recA Neisseria gonorrhoeae strain FA1090

69.325

93.143

0.646
  recA Ralstonia pseudosolanacearum GMI1000

72.347

88.857

0.643
  recA Streptococcus mutans UA159

59.026

99.714

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.747

94.857

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.714

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.143

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.585

93.714

0.577
  recA Helicobacter pylori 26695

61.846

92.857

0.574
  recA Streptococcus pyogenes NZ131

61.846

92.857

0.574
  recA Helicobacter pylori strain NCTC11637

61.538

92.857

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

91.714

0.569
  recA Streptococcus pneumoniae Rx1

61.61

92.286

0.569
  recA Streptococcus pneumoniae R6

61.61

92.286

0.569
  recA Streptococcus pneumoniae TIGR4

61.61

92.286

0.569
  recA Streptococcus pneumoniae D39

61.61

92.286

0.569
  recA Streptococcus mitis NCTC 12261

60.681

92.286

0.56
  recA Streptococcus mitis SK321

60.185

92.571

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.752

92.286

0.551