Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VVL01_RS05115 Genome accession   NZ_CP142519
Coordinates   1131341..1132354 (+) Length   337 a.a.
NCBI ID   WP_013186461.1    Uniprot ID   A3U6B8
Organism   Croceibacter atlanticus strain CE21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126341..1137354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVL01_RS05100 (VVL01_05100) - 1128144..1128626 (-) 483 WP_327019181.1 gliding motility lipoprotein GldH -
  VVL01_RS05105 (VVL01_05105) - 1128630..1129802 (-) 1173 WP_013186458.1 stage 0 sporulation family protein -
  VVL01_RS05110 (VVL01_05110) - 1129898..1130929 (-) 1032 WP_013186459.1 rhodanese-related sulfurtransferase -
  VVL01_RS05115 (VVL01_05115) recA 1131341..1132354 (+) 1014 WP_013186461.1 recombinase RecA Machinery gene
  VVL01_RS05120 (VVL01_05120) - 1132455..1132865 (+) 411 WP_013186462.1 hypothetical protein -
  VVL01_RS05125 (VVL01_05125) - 1132881..1133420 (+) 540 WP_013186463.1 RNA polymerase sigma factor -
  VVL01_RS05130 (VVL01_05130) - 1133429..1134925 (+) 1497 WP_327019182.1 hypothetical protein -
  VVL01_RS05135 (VVL01_05135) - 1135052..1135798 (-) 747 WP_327019183.1 lysophospholipid acyltransferase family protein -
  VVL01_RS05140 (VVL01_05140) trpS 1135873..1136841 (+) 969 WP_272972836.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36669.19 Da        Isoelectric Point: 6.7395

>NTDB_id=926012 VVL01_RS05115 WP_013186461.1 1131341..1132354(+) (recA) [Croceibacter atlanticus strain CE21]
MSDKKEKEAKLKALKLTLDKMDKTYGKGTVMKMSDQSVSDVEAISTGSLGLDLALGVGGYPRGRIVEIYGPESSGKTTLT
LHAIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGEQALEITDNLIRSGAIDIIVIDSVAALTPKSEIE
GEMGDSKMGLHARLMSQALRKLTGSISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYCSVRLDIRRSTQIKDSNS
EVQGNKTRVKVVKNKVAPPFRTAEFDIMYGQGISKVGEIIDIGVDYEIVKKAGSWFSYEDTKLGQGRDAVKALLLDNPEL
MEELETKIKAAIKVAKE

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=926012 VVL01_RS05115 WP_013186461.1 1131341..1132354(+) (recA) [Croceibacter atlanticus strain CE21]
ATGAGCGATAAAAAAGAAAAAGAAGCAAAACTAAAAGCACTAAAGCTTACTTTAGATAAGATGGACAAGACTTATGGTAA
AGGTACAGTCATGAAAATGAGTGATCAATCTGTGAGTGATGTTGAAGCAATTTCTACAGGTTCTTTAGGCTTAGATTTAG
CTTTGGGAGTAGGTGGTTACCCTAGAGGACGTATAGTTGAAATTTACGGTCCAGAATCTTCAGGTAAGACAACCTTAACC
TTGCACGCCATAGCAGAAGCTCAAAAAGCGGGTGGCATAGCTGCTTTTATAGATGCAGAACACGCTTTTGACCGTTTTTA
TGCTGAAAAATTAGGAGTAGACTTAGAGAACTTAATTATATCTCAACCAGATAATGGTGAGCAGGCCCTAGAAATTACAG
ACAACTTAATTAGATCTGGCGCTATAGATATTATTGTAATTGACTCGGTTGCGGCACTTACACCTAAAAGTGAGATTGAA
GGTGAAATGGGAGATTCTAAAATGGGTCTTCACGCAAGATTAATGTCTCAAGCATTAAGAAAGCTAACAGGATCTATAAG
TAAAACCAAGTGTACCGTTATCTTCATTAACCAATTACGTGAAAAAATTGGAGTTATGTTTGGTAACCCAGAAACTACAA
CAGGTGGTAATGCACTTAAATTTTACTGTTCAGTTAGATTAGACATTCGTCGATCTACACAAATAAAAGACAGCAATAGC
GAGGTGCAAGGTAATAAGACACGTGTAAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAGAACAGCAGAGTTCGATAT
TATGTACGGTCAAGGAATTTCTAAGGTTGGTGAAATTATTGATATTGGTGTAGACTATGAAATTGTTAAAAAAGCAGGTT
CCTGGTTTAGCTATGAAGACACAAAGCTAGGACAAGGTAGAGATGCTGTAAAAGCATTATTACTAGATAATCCAGAGTTA
ATGGAAGAGCTAGAAACCAAAATTAAAGCCGCCATAAAAGTGGCAAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3U6B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.596

97.626

0.748
  recA Neisseria gonorrhoeae strain FA1090

65.257

98.22

0.641
  recA Neisseria gonorrhoeae MS11

65.257

98.22

0.641
  recA Neisseria gonorrhoeae MS11

65.257

98.22

0.641
  recA Ralstonia pseudosolanacearum GMI1000

66.879

93.175

0.623
  recA Acinetobacter baylyi ADP1

65.312

94.955

0.62
  recA Acinetobacter baumannii D1279779

64.286

95.549

0.614
  recA Helicobacter pylori strain NCTC11637

63.497

96.736

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

62.614

97.626

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

96.736

0.611
  recA Helicobacter pylori 26695

63.19

96.736

0.611
  recA Glaesserella parasuis strain SC1401

63.58

96.142

0.611
  recA Pseudomonas stutzeri DSM 10701

62.691

97.033

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

95.549

0.596
  recA Vibrio cholerae strain A1552

62.422

95.549

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

58.967

97.626

0.576
  recA Streptococcus pyogenes NZ131

58.967

97.626

0.576
  recA Streptococcus mitis NCTC 12261

60.436

95.252

0.576
  recA Streptococcus mitis SK321

60.436

95.252

0.576
  recA Streptococcus mutans UA159

58.055

97.626

0.567
  recA Streptococcus pneumoniae TIGR4

59.006

95.549

0.564
  recA Streptococcus pneumoniae R6

59.006

95.549

0.564
  recA Streptococcus pneumoniae Rx1

59.006

95.549

0.564
  recA Streptococcus pneumoniae D39

59.006

95.549

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.514

95.846

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.627

98.516

0.558