Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VUQ07_RS02430 Genome accession   NZ_CP142436
Coordinates   528005..529114 (-) Length   369 a.a.
NCBI ID   WP_347298283.1    Uniprot ID   -
Organism   Dolosigranulum savutiense strain MSK211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 523005..534114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ07_RS02405 (VUQ07_02405) secG 523775..524005 (-) 231 WP_347298287.1 preprotein translocase subunit SecG -
  VUQ07_RS02410 (VUQ07_02410) - 524072..524722 (-) 651 WP_208957535.1 hypothetical protein -
  VUQ07_RS02415 (VUQ07_02415) - 524869..525396 (+) 528 WP_347298286.1 transcription repressor NadR -
  VUQ07_RS02420 (VUQ07_02420) - 525516..526064 (+) 549 WP_347298285.1 hypothetical protein -
  VUQ07_RS02425 (VUQ07_02425) rny 526127..527689 (-) 1563 WP_347298284.1 ribonuclease Y -
  VUQ07_RS02430 (VUQ07_02430) recA 528005..529114 (-) 1110 WP_347298283.1 recombinase RecA Machinery gene
  VUQ07_RS02435 (VUQ07_02435) - 529195..530376 (-) 1182 WP_347298282.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  VUQ07_RS02440 (VUQ07_02440) pgsA 530476..531054 (-) 579 WP_347298713.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VUQ07_RS02445 (VUQ07_02445) - 531064..531906 (-) 843 WP_347298281.1 helix-turn-helix domain-containing protein -
  VUQ07_RS02450 (VUQ07_02450) yfmH 531944..533236 (-) 1293 WP_347298280.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40200.54 Da        Isoelectric Point: 4.6019

>NTDB_id=925976 VUQ07_RS02430 WP_347298283.1 528005..529114(-) (recA) [Dolosigranulum savutiense strain MSK211]
MVSDDRQKALDKALKNIEKNFGKGSIMKMGEKVDTEVRSVPSGSLALDVALGIGGYPRGRIIEVYGPESSGKTTVALHAI
AAVQEEGGVAAFIDAEHALDPKYARALGVDVDELLLSQPDTGEQALEITDALVASGAIDIIVVDSVAALVPRAEIDGEMG
DAHVGLQARLMSQALRKLSGSINKTKTICMFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEKIKSGSDLTGN
RTKIKIVKNKVAPPFKTAMVDIMYGKGISQVGELVDMGADADVITKAGAWYSYGEERLGQGRENAKEFLEENFEIRKEID
RKVRLAYEVIDEEEFERLEKLAAERANQAGEHEVDEEIEETEDNTSVDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=925976 VUQ07_RS02430 WP_347298283.1 528005..529114(-) (recA) [Dolosigranulum savutiense strain MSK211]
ATGGTATCAGATGACCGTCAGAAAGCGTTAGATAAAGCATTAAAGAATATTGAGAAGAATTTCGGTAAAGGGTCAATTAT
GAAAATGGGGGAGAAAGTCGATACTGAGGTGCGTTCAGTACCGAGTGGATCCTTAGCACTCGATGTTGCACTTGGTATTG
GTGGATATCCACGCGGTCGTATTATTGAAGTATACGGTCCAGAAAGTTCTGGTAAGACGACTGTAGCGCTACATGCAATT
GCTGCTGTACAAGAAGAAGGTGGCGTGGCAGCCTTTATCGATGCTGAGCATGCCTTAGATCCCAAATATGCTCGAGCATT
GGGCGTTGATGTGGATGAATTATTACTTTCACAGCCAGATACTGGAGAACAAGCACTGGAAATTACAGATGCCTTAGTAG
CTAGTGGGGCAATTGATATTATTGTTGTTGACTCAGTTGCAGCGTTGGTTCCACGCGCTGAGATTGATGGTGAGATGGGA
GATGCTCACGTGGGACTGCAAGCGCGTCTGATGTCACAAGCACTCCGTAAATTATCCGGATCGATTAATAAAACAAAAAC
TATCTGTATGTTTATTAACCAAATTCGTGAAAAAATTGGGGTTATGTTCGGAAATCCAGAGACAACACCAGGTGGACGTG
CCTTGAAATTCTATTCATCCGTTCGTTTAGAAGTTCGTCGTGCCGAAAAAATTAAATCAGGGTCTGATTTAACCGGTAAC
CGAACTAAAATTAAAATTGTGAAGAACAAAGTAGCCCCACCATTTAAGACAGCAATGGTTGACATTATGTATGGAAAAGG
TATCTCTCAAGTTGGTGAACTTGTTGATATGGGAGCCGATGCTGATGTGATTACCAAAGCTGGTGCATGGTATTCTTATG
GAGAAGAACGCCTCGGTCAAGGACGTGAGAATGCAAAAGAATTCTTAGAAGAAAACTTCGAAATCCGCAAAGAAATTGAC
CGTAAAGTCCGCTTAGCTTATGAAGTCATTGATGAAGAAGAGTTTGAGCGACTAGAAAAATTAGCTGCAGAACGAGCAAA
CCAAGCGGGAGAGCATGAAGTTGATGAAGAGATCGAGGAGACGGAAGACAATACGTCAGTTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

75.749

90.515

0.686
  recA Bacillus subtilis subsp. subtilis str. 168

77.399

87.534

0.678
  recA Streptococcus mitis NCTC 12261

65.123

99.458

0.648
  recA Streptococcus mutans UA159

65.385

98.645

0.645
  recA Streptococcus pneumoniae Rx1

69.162

90.515

0.626
  recA Streptococcus pneumoniae D39

69.162

90.515

0.626
  recA Streptococcus pneumoniae R6

69.162

90.515

0.626
  recA Streptococcus pneumoniae TIGR4

69.162

90.515

0.626
  recA Streptococcus mitis SK321

68.862

90.515

0.623
  recA Streptococcus pyogenes NZ131

69.207

88.889

0.615
  recA Lactococcus lactis subsp. cremoris KW2

65.269

90.515

0.591
  recA Neisseria gonorrhoeae MS11

64.815

87.805

0.569
  recA Neisseria gonorrhoeae MS11

64.815

87.805

0.569
  recA Neisseria gonorrhoeae strain FA1090

64.815

87.805

0.569
  recA Ralstonia pseudosolanacearum GMI1000

66.234

83.469

0.553
  recA Acinetobacter baylyi ADP1

57.627

95.935

0.553
  recA Acinetobacter baumannii D1279779

61.92

87.534

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

88.076

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

88.889

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

87.534

0.539
  recA Vibrio cholerae strain A1552

61.61

87.534

0.539
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.494

87.805

0.531
  recA Pseudomonas stutzeri DSM 10701

61.059

86.992

0.531
  recA Glaesserella parasuis strain SC1401

60.748

86.992

0.528
  recA Helicobacter pylori 26695

59.568

87.805

0.523
  recA Helicobacter pylori strain NCTC11637

59.259

87.805

0.52