Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VUQ08_RS02425 Genome accession   NZ_CP142433
Coordinates   540260..541369 (-) Length   369 a.a.
NCBI ID   WP_347300765.1    Uniprot ID   A0AB74TYD9
Organism   Dolosigranulum savutiense strain MSK433     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535260..546369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ08_RS02400 (VUQ08_02405) secG 536047..536277 (-) 231 WP_347300760.1 preprotein translocase subunit SecG -
  VUQ08_RS02405 (VUQ08_02410) - 536344..536991 (-) 648 WP_347300761.1 hypothetical protein -
  VUQ08_RS02410 (VUQ08_02415) - 537138..537665 (+) 528 WP_347300762.1 transcription repressor NadR -
  VUQ08_RS02415 (VUQ08_02420) - 537771..538319 (+) 549 WP_347300763.1 hypothetical protein -
  VUQ08_RS02420 (VUQ08_02425) rny 538382..539944 (-) 1563 WP_347300764.1 ribonuclease Y -
  VUQ08_RS02425 (VUQ08_02430) recA 540260..541369 (-) 1110 WP_347300765.1 recombinase RecA Machinery gene
  VUQ08_RS02430 (VUQ08_02435) - 541450..542631 (-) 1182 WP_347300766.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  VUQ08_RS02435 (VUQ08_02440) pgsA 542731..543309 (-) 579 WP_347301015.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VUQ08_RS02440 (VUQ08_02445) - 543319..544161 (-) 843 WP_347300767.1 helix-turn-helix domain-containing protein -
  VUQ08_RS02445 (VUQ08_02450) yfmH 544199..545491 (-) 1293 WP_347300768.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40086.39 Da        Isoelectric Point: 4.5174

>NTDB_id=925904 VUQ08_RS02425 WP_347300765.1 540260..541369(-) (recA) [Dolosigranulum savutiense strain MSK433]
MVSDDRQKALDKALKNIEKNFGKGSIMKMGEKVDTEVRSVPSGSLALDVALGIGGYPRGRIIEVYGPESSGKTTVALHAI
AAVQEEGGVAAFIDAEHALDPKYARALGVDVDELLLSQPDTGEQALEITDALVASGAIDIIVVDSVAALVPRAEIDGEMG
DAHVGLQARLMSQALRKLSGSINKTKTICMFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEKIKSGSDLTGN
RTKIKIVKNKVAPPFKTAMVDIMYGQGISQVGELVDMGADADVITKAGAWYSYGEERLGQGRENAKEFLEENLEIRKEID
RKVRLAYGVIDEEEFERLQQLAAERAEQASELEVDEEIEETEDNTSADE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=925904 VUQ08_RS02425 WP_347300765.1 540260..541369(-) (recA) [Dolosigranulum savutiense strain MSK433]
ATGGTATCAGATGACCGTCAGAAAGCGTTAGATAAAGCATTAAAGAATATTGAGAAGAATTTCGGTAAAGGGTCAATTAT
GAAAATGGGGGAGAAAGTCGATACGGAGGTGCGTTCAGTACCGAGTGGCTCCTTAGCACTCGATGTTGCACTTGGTATTG
GTGGATACCCACGCGGTCGTATTATTGAAGTATACGGTCCAGAAAGTTCTGGTAAGACGACTGTAGCGCTACATGCAATT
GCTGCTGTACAAGAAGAAGGTGGCGTGGCAGCCTTTATCGATGCTGAGCATGCCTTAGATCCCAAATATGCTCGAGCATT
GGGCGTTGATGTGGATGAATTATTACTTTCACAGCCAGATACTGGAGAGCAAGCACTGGAAATTACAGATGCCTTAGTAG
CTAGTGGGGCAATTGATATTATTGTTGTTGACTCAGTTGCAGCGTTGGTTCCACGCGCTGAGATTGATGGTGAGATGGGA
GATGCTCACGTGGGACTGCAAGCGCGTCTGATGTCACAAGCACTCCGTAAATTATCCGGATCGATTAATAAAACAAAAAC
TATCTGTATGTTTATTAACCAAATTCGTGAAAAAATTGGGGTTATGTTCGGAAATCCAGAAACAACACCAGGTGGACGTG
CCTTGAAATTCTATTCATCCGTTCGTTTAGAAGTTCGTCGTGCCGAAAAAATTAAATCAGGGTCTGATTTAACCGGTAAC
CGAACTAAAATTAAAATTGTGAAGAACAAAGTAGCCCCACCATTTAAGACAGCAATGGTTGACATTATGTATGGACAAGG
TATCTCGCAAGTTGGTGAGCTCGTCGATATGGGAGCCGATGCTGATGTGATTACTAAAGCAGGTGCATGGTATTCTTATG
GGGAAGAACGTCTCGGTCAAGGACGTGAGAATGCAAAAGAGTTCTTAGAAGAAAACCTTGAGATCAGAAAAGAGATTGAT
CGTAAGGTACGGTTAGCTTATGGCGTAATTGATGAAGAAGAGTTTGAGCGACTGCAACAATTGGCAGCAGAGAGAGCAGA
ACAAGCTTCAGAGCTCGAAGTAGATGAAGAAATTGAAGAGACGGAAGACAATACGTCAGCTGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.347

90.515

0.691
  recA Bacillus subtilis subsp. subtilis str. 168

77.231

88.076

0.68
  recA Streptococcus mutans UA159

65.659

98.645

0.648
  recA Streptococcus pneumoniae D39

66.48

97.019

0.645
  recA Streptococcus pneumoniae Rx1

66.48

97.019

0.645
  recA Streptococcus pneumoniae R6

66.48

97.019

0.645
  recA Streptococcus pneumoniae TIGR4

66.48

97.019

0.645
  recA Streptococcus mitis NCTC 12261

66.017

97.29

0.642
  recA Streptococcus pyogenes NZ131

65.833

97.561

0.642
  recA Streptococcus mitis SK321

69.162

90.515

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.569

90.515

0.593
  recA Neisseria gonorrhoeae strain FA1090

64.438

89.16

0.575
  recA Neisseria gonorrhoeae MS11

64.438

89.16

0.575
  recA Neisseria gonorrhoeae MS11

64.438

89.16

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.217

97.29

0.566
  recA Vibrio cholerae strain A1552

58.217

97.29

0.566
  recA Ralstonia pseudosolanacearum GMI1000

65.815

84.824

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

88.889

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

88.076

0.539
  recA Acinetobacter baumannii D1279779

61.61

87.534

0.539
  recA Acinetobacter baylyi ADP1

60.991

87.534

0.534
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.878

89.16

0.534
  recA Pseudomonas stutzeri DSM 10701

60.748

86.992

0.528
  recA Glaesserella parasuis strain SC1401

60.748

86.992

0.528
  recA Helicobacter pylori 26695

59.146

88.889

0.526
  recA Helicobacter pylori strain NCTC11637

58.841

88.889

0.523