Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   U6115_RS16920 Genome accession   NZ_CP142381
Coordinates   3542516..3543568 (+) Length   350 a.a.
NCBI ID   WP_043574009.1    Uniprot ID   A0A2R2IUA4
Organism   Chromobacterium subtsugae strain ATCC 31532     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3537516..3548568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6115_RS16900 (U6115_16900) - 3537912..3538238 (-) 327 WP_043574004.1 YbaB/EbfC family nucleoid-associated protein -
  U6115_RS16905 (U6115_16905) dnaX 3538245..3540173 (-) 1929 WP_043574007.1 DNA polymerase III subunit gamma/tau -
  U6115_RS16910 (U6115_16910) mltB 3540258..3541301 (-) 1044 WP_172670379.1 lytic murein transglycosylase B -
  U6115_RS16915 (U6115_16915) hrcA 3541335..3542357 (-) 1023 WP_043574169.1 heat-inducible transcriptional repressor HrcA -
  U6115_RS16920 (U6115_16920) recA 3542516..3543568 (+) 1053 WP_043574009.1 recombinase RecA Machinery gene
  U6115_RS16925 (U6115_16925) recX 3543568..3544026 (+) 459 WP_043574012.1 recombination regulator RecX -
  U6115_RS16930 (U6115_16930) - 3544030..3544488 (+) 459 WP_043574014.1 SRPBCC domain-containing protein -
  U6115_RS16935 (U6115_16935) alaS 3544554..3547187 (+) 2634 WP_043574016.1 alanine--tRNA ligase -
  U6115_RS16940 (U6115_16940) - 3547295..3547786 (+) 492 WP_043574018.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37943.26 Da        Isoelectric Point: 4.9657

>NTDB_id=925628 U6115_RS16920 WP_043574009.1 3542516..3543568(+) (recA) [Chromobacterium subtsugae strain ATCC 31532]
MASEDKSKALAAALSQIEKQFGKGSIMRMSDNQINENLQVVSTGSLSLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEMQKLGGTCAYIDAENALDPQYAQKLGVKVDDLLISQPDTGEQALEICDMLVRSSGVDLIVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKSNPAIAEEI
ERKIREAVGVKIEINENQGDEEFADDALDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=925628 U6115_RS16920 WP_043574009.1 3542516..3543568(+) (recA) [Chromobacterium subtsugae strain ATCC 31532]
ATGGCTTCCGAAGACAAGAGCAAGGCGCTCGCCGCCGCCCTCTCCCAGATTGAAAAGCAGTTCGGCAAGGGTTCGATCAT
GCGCATGAGCGACAACCAGATCAACGAAAACCTGCAGGTGGTCTCCACCGGCTCGCTGAGTCTGGACTTGGCGCTTGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGCCCGGAGTCGTCCGGCAAGACCACCCTGTGTCTGCAAGCC
GTGGCCGAGATGCAAAAATTGGGCGGCACCTGCGCCTACATCGACGCCGAAAACGCGCTGGACCCGCAATACGCGCAAAA
GCTGGGCGTCAAGGTCGACGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TGCGCTCCAGCGGCGTCGATCTGATCGTGATCGACTCGGTGGCCGCCTTGGTGCCCAAGGCTGAAATCGAAGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAAGTGATCGGC
AACGACACCCGCGTCAAAGTAGTGAAGAACAAGGTGTCCCCGCCGTTCCGCCAGGCCGATTTCGAAATCCTGTACGGCGA
AGGCATCTCCCGCCAGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCGT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAGTCCAACCCGGCGATCGCTGAGGAAATC
GAACGCAAGATCCGCGAAGCGGTGGGCGTGAAGATCGAAATCAACGAAAACCAGGGCGACGAAGAGTTCGCCGACGACGC
CCTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R2IUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

76.991

96.857

0.746
  recA Neisseria gonorrhoeae MS11

76.991

96.857

0.746
  recA Neisseria gonorrhoeae MS11

76.991

96.857

0.746
  recA Ralstonia pseudosolanacearum GMI1000

79.618

89.714

0.714
  recA Pseudomonas stutzeri DSM 10701

70.605

99.143

0.7
  recA Acinetobacter baylyi ADP1

70.427

93.714

0.66
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

92.286

0.66
  recA Vibrio cholerae strain A1552

71.517

92.286

0.66
  recA Acinetobacter baumannii D1279779

70.898

92.286

0.654
  recA Glaesserella parasuis strain SC1401

70.245

93.143

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

96.857

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.874

95.429

0.6
  recA Helicobacter pylori strain NCTC11637

62.952

94.857

0.597
  recA Helicobacter pylori 26695

62.952

94.857

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

94.286

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

93.143

0.586
  recA Streptococcus mutans UA159

58.841

98.571

0.58
  recA Streptococcus pneumoniae D39

56.338

100

0.571
  recA Streptococcus pneumoniae Rx1

56.338

100

0.571
  recA Streptococcus pneumoniae R6

56.338

100

0.571
  recA Streptococcus pneumoniae TIGR4

56.338

100

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.606

94.286

0.571
  recA Streptococcus mitis NCTC 12261

58.017

98

0.569
  recA Streptococcus pyogenes NZ131

59.091

94.286

0.557
  recA Streptococcus mitis SK321

58.485

94.286

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

93.429

0.54