Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VKP55_RS08570 Genome accession   NZ_CP142351
Coordinates   1716639..1717775 (-) Length   378 a.a.
NCBI ID   WP_111705837.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1366     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711639..1722775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP55_RS08545 (VKP55_08545) - 1712863..1714422 (-) 1560 WP_011055088.1 membrane protein -
  VKP55_RS08550 (VKP55_08550) - 1714835..1715140 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  VKP55_RS08555 (VKP55_08555) ruvX 1715152..1715571 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  VKP55_RS08560 (VKP55_08560) - 1715568..1715837 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  VKP55_RS08565 (VKP55_08565) spx 1715951..1716349 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  VKP55_RS08570 (VKP55_08570) recA 1716639..1717775 (-) 1137 WP_111705837.1 recombinase RecA Machinery gene
  VKP55_RS08575 (VKP55_08575) cinA 1717864..1719135 (-) 1272 WP_326674187.1 competence/damage-inducible protein A Machinery gene
  VKP55_RS08580 (VKP55_08580) - 1719204..1719764 (-) 561 WP_326674189.1 DNA-3-methyladenine glycosylase I -
  VKP55_RS08585 (VKP55_08585) ruvA 1719774..1720370 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  VKP55_RS08590 (VKP55_08590) - 1720372..1721592 (-) 1221 WP_002992187.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40662.24 Da        Isoelectric Point: 4.8451

>NTDB_id=925072 VKP55_RS08570 WP_111705837.1 1716639..1717775(-) (recA) [Streptococcus pyogenes strain SS1366]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNSEKIGQGSE
NAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=925072 VKP55_RS08570 WP_111705837.1 1716639..1717775(-) (recA) [Streptococcus pyogenes strain SS1366]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCTCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTCGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGATCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCCGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACAACTCAAATTAAAGGAACTGGTGACCAAAAAGATAGCAGCATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATAGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGATCATCCAGAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

99.206

100

0.992
  recA Streptococcus mutans UA159

87.467

100

0.886
  recA Streptococcus mitis NCTC 12261

85.602

100

0.865
  recA Streptococcus mitis SK321

85.564

100

0.862
  recA Streptococcus pneumoniae Rx1

84.675

100

0.862
  recA Streptococcus pneumoniae D39

84.675

100

0.862
  recA Streptococcus pneumoniae R6

84.675

100

0.862
  recA Streptococcus pneumoniae TIGR4

84.675

100

0.862
  recA Lactococcus lactis subsp. cremoris KW2

78.754

93.386

0.735
  recA Latilactobacillus sakei subsp. sakei 23K

70.92

89.153

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

87.037

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.315

89.153

0.556
  recA Acinetobacter baumannii D1279779

58.924

93.386

0.55
  recA Acinetobacter baylyi ADP1

59.429

92.593

0.55
  recA Neisseria gonorrhoeae MS11

60.058

90.741

0.545
  recA Neisseria gonorrhoeae MS11

60.058

90.741

0.545
  recA Neisseria gonorrhoeae strain FA1090

60.058

90.741

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.286

92.593

0.54
  recA Vibrio cholerae strain A1552

58.286

92.593

0.54
  recA Glaesserella parasuis strain SC1401

59.706

89.947

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85.45

0.537
  recA Pseudomonas stutzeri DSM 10701

56.897

92.063

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.566

0.519
  recA Helicobacter pylori 26695

58.084

88.36

0.513
  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513
  recA Ralstonia pseudosolanacearum GMI1000

57.831

87.831

0.508