Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VKP35_RS08970 Genome accession   NZ_CP142349
Coordinates   1755436..1756572 (-) Length   378 a.a.
NCBI ID   WP_326622828.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 11RS100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750436..1761572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP35_RS08945 (VKP35_08945) - 1751660..1753219 (-) 1560 WP_111713421.1 DUF2079 domain-containing protein -
  VKP35_RS08950 (VKP35_08950) - 1753632..1753937 (-) 306 WP_326622826.1 DUF1292 domain-containing protein -
  VKP35_RS08955 (VKP35_08955) ruvX 1753949..1754368 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  VKP35_RS08960 (VKP35_08960) - 1754365..1754634 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  VKP35_RS08965 (VKP35_08965) spx 1754747..1755145 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  VKP35_RS08970 (VKP35_08970) recA 1755436..1756572 (-) 1137 WP_326622828.1 recombinase RecA Machinery gene
  VKP35_RS08975 (VKP35_08975) cinA 1756661..1757932 (-) 1272 WP_111713422.1 competence/damage-inducible protein A Machinery gene
  VKP35_RS08980 (VKP35_08980) - 1758001..1758561 (-) 561 WP_023611248.1 DNA-3-methyladenine glycosylase I -
  VKP35_RS08985 (VKP35_08985) ruvA 1758571..1759167 (-) 597 WP_002982180.1 Holliday junction branch migration protein RuvA -
  VKP35_RS08990 (VKP35_08990) - 1759169..1760389 (-) 1221 WP_002982178.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40616.21 Da        Isoelectric Point: 4.8482

>NTDB_id=924963 VKP35_RS08970 WP_326622828.1 1755436..1756572(-) (recA) [Streptococcus pyogenes strain 11RS100]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
ATQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLAEHPELFDEIDRKVRVKFGLLEESEEESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=924963 VKP35_RS08970 WP_326622828.1 1755436..1756572(-) (recA) [Streptococcus pyogenes strain 11RS100]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCCCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTTGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGACCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCCGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
GCAACTCAAATTAAAGGAACTGGTGACCAAAAAGATAGCAGCATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGAACATCCAGAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

98.942

100

0.989
  recA Streptococcus mutans UA159

87.467

100

0.886
  recA Streptococcus pneumoniae Rx1

84.935

100

0.865
  recA Streptococcus pneumoniae D39

84.935

100

0.865
  recA Streptococcus pneumoniae R6

84.935

100

0.865
  recA Streptococcus pneumoniae TIGR4

84.935

100

0.865
  recA Streptococcus mitis NCTC 12261

85.34

100

0.862
  recA Streptococcus mitis SK321

85.302

100

0.86
  recA Lactococcus lactis subsp. cremoris KW2

79.037

93.386

0.738
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

89.153

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

87.037

0.598
  recA Acinetobacter baylyi ADP1

60

92.593

0.556
  recA Acinetobacter baumannii D1279779

59.49

93.386

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae MS11

60.35

90.741

0.548
  recA Neisseria gonorrhoeae strain FA1090

60.35

90.741

0.548
  recA Glaesserella parasuis strain SC1401

60.294

89.947

0.542
  recA Vibrio cholerae strain A1552

58.571

92.593

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.571

92.593

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

85.45

0.54
  recA Pseudomonas stutzeri DSM 10701

57.184

92.063

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.517

87.566

0.521
  recA Helicobacter pylori strain NCTC11637

58.383

88.36

0.516
  recA Helicobacter pylori 26695

58.383

88.36

0.516
  recA Ralstonia pseudosolanacearum GMI1000

59.621

83.862

0.5