Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PanNE5_RS10695 Genome accession   NZ_AP025517
Coordinates   2338273..2339337 (+) Length   354 a.a.
NCBI ID   WP_261939730.1    Uniprot ID   -
Organism   Pandoraea sp. NE5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333273..2344337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PanNE5_RS10680 (PanNE5_21110) - 2333857..2335515 (-) 1659 WP_026131762.1 MFS transporter -
  PanNE5_RS10685 (PanNE5_21120) - 2335687..2337330 (-) 1644 WP_017232932.1 HAMP domain-containing histidine kinase -
  PanNE5_RS10690 (PanNE5_21130) - 2337381..2338070 (-) 690 WP_017232933.1 response regulator transcription factor -
  PanNE5_RS10695 (PanNE5_21140) recA 2338273..2339337 (+) 1065 WP_261939730.1 recombinase RecA Machinery gene
  PanNE5_RS10700 (PanNE5_21150) recX 2339438..2339983 (+) 546 WP_315973480.1 recombination regulator RecX -
  PanNE5_RS10705 (PanNE5_21160) - 2340293..2340979 (+) 687 WP_017232936.1 DUF2889 domain-containing protein -
  PanNE5_RS10710 (PanNE5_21170) sucC 2340976..2342142 (+) 1167 WP_017232937.1 ADP-forming succinate--CoA ligase subunit beta -
  PanNE5_RS10715 (PanNE5_21180) sucD 2342225..2343106 (+) 882 WP_017232938.1 succinate--CoA ligase subunit alpha -
  PanNE5_RS10720 (PanNE5_21190) - 2343262..2343990 (+) 729 WP_150563621.1 TerC family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37804.17 Da        Isoelectric Point: 4.8261

>NTDB_id=92449 PanNE5_RS10695 WP_261939730.1 2338273..2339337(+) (recA) [Pandoraea sp. NE5]
MEESKKGSANLSAEKGKALAAALAQIEKQFGKGSIMRLGDSEVEADIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVVAEMQKVGGTCAFIDAEHALDVGYANKLGVSVPELLISQPDTGEQALEIADALVRSSSIDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCTVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKGDEVVGNETRVKVVKNKVSPPFREAIFDILYGQGISREGEIIDLGVNAKIVEKAGAWYSYNGEKIGQGKDNAREFLR
ENPDIAREIENKVRASLGVTAINETGEIEADDEV

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=92449 PanNE5_RS10695 WP_261939730.1 2338273..2339337(+) (recA) [Pandoraea sp. NE5]
ATGGAAGAAAGCAAGAAAGGGTCTGCCAATCTGTCGGCCGAGAAAGGCAAGGCGCTGGCCGCCGCCCTCGCGCAGATCGA
AAAGCAATTCGGCAAGGGCTCGATCATGCGTCTGGGCGACAGCGAGGTCGAAGCGGACATCCAGGTCGTCTCGACCGGCT
CGCTGGGCCTGGACATCGCGCTGGGCGTGGGTGGCTTGCCGCGTGGGCGCGTGATCGAAATCTACGGTCCGGAATCGTCG
GGTAAGACCACGCTCACGCTGCAAGTCGTGGCGGAAATGCAGAAGGTCGGTGGCACTTGCGCGTTTATCGACGCCGAGCA
CGCCCTCGATGTCGGCTACGCCAACAAACTGGGCGTGTCGGTGCCGGAACTGCTGATCTCGCAGCCGGACACGGGCGAAC
AAGCCCTCGAGATCGCCGACGCGCTGGTGCGCTCGAGCTCGATCGACCTCATCGTCATCGACTCGGTGGCGGCGCTGGTG
CCGAAGGCCGAAATCGAAGGGGAAATGGGCGATTCGCTGCCGGGTCTGCAGGCGCGTCTGATGTCCCAGGCCCTGCGCAA
GCTGACCGGTACCATCAAGCGCACGAACTGCACGGTGATCTTCATCAACCAGATTCGGATGAAGATCGGTGTGATGTTCG
GTAACCCGGAAACTACTACGGGCGGAAACGCACTGAAGTTCTACTCATCGGTGCGTCTCGACATTCGCCGGATCGGCTCG
ATCAAGAAGGGTGACGAGGTCGTCGGCAACGAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCGATTTTCGATATCCTTTATGGCCAGGGGATTTCGCGCGAAGGCGAAATCATCGATCTGGGCGTGAACGCGAAGATCG
TCGAGAAGGCTGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGTGAATTCCTGCGC
GAAAATCCGGATATCGCCCGCGAGATCGAAAATAAGGTACGCGCATCGCTCGGCGTCACGGCAATCAACGAGACCGGCGA
GATCGAAGCAGACGACGAGGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.593

100

0.856
  recA Neisseria gonorrhoeae MS11

72.965

97.175

0.709
  recA Neisseria gonorrhoeae MS11

72.965

97.175

0.709
  recA Neisseria gonorrhoeae strain FA1090

72.965

97.175

0.709
  recA Pseudomonas stutzeri DSM 10701

71.637

96.61

0.692
  recA Acinetobacter baylyi ADP1

71.681

95.763

0.686
  recA Acinetobacter baumannii D1279779

70.845

96.893

0.686
  recA Glaesserella parasuis strain SC1401

68.605

97.175

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

92.373

0.667
  recA Vibrio cholerae strain A1552

72.171

92.373

0.667
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.373

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.09

0.599
  recA Helicobacter pylori 26695

64.134

92.938

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.938

0.593
  recA Helicobacter pylori strain NCTC11637

63.83

92.938

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.471

96.045

0.59
  recA Streptococcus pneumoniae D39

59.429

98.87

0.588
  recA Streptococcus pneumoniae Rx1

59.429

98.87

0.588
  recA Streptococcus pneumoniae R6

59.429

98.87

0.588
  recA Streptococcus pneumoniae TIGR4

59.429

98.87

0.588
  recA Streptococcus mitis NCTC 12261

59.599

98.588

0.588
  recA Streptococcus mitis SK321

59.312

98.588

0.585
  recA Streptococcus mutans UA159

59.884

97.175

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.706

96.045

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.423

93.503

0.565
  recA Streptococcus pyogenes NZ131

60.486

92.938

0.562

Multiple sequence alignment