Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DPPLL_RS05885 Genome accession   NZ_AP025516
Coordinates   1256175..1257206 (-) Length   343 a.a.
NCBI ID   WP_284153883.1    Uniprot ID   -
Organism   Desulfofustis limnaeus strain PPLL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251175..1262206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPPLL_RS05850 (DPPLL_11700) coxB 1251378..1251968 (+) 591 WP_284153876.1 cytochrome c oxidase subunit II -
  DPPLL_RS05855 (DPPLL_11710) - 1251965..1252876 (+) 912 WP_284153877.1 UbiA family prenyltransferase -
  DPPLL_RS05860 (DPPLL_11720) - 1252936..1253094 (+) 159 WP_284153878.1 hypothetical protein -
  DPPLL_RS05865 (DPPLL_11730) - 1253160..1253477 (+) 318 WP_284153879.1 ArsC family (seleno)protein -
  DPPLL_RS05870 (DPPLL_11740) - 1253474..1254196 (-) 723 WP_284153880.1 hypothetical protein -
  DPPLL_RS05875 (DPPLL_11750) - 1254445..1254606 (-) 162 WP_284153881.1 rubredoxin -
  DPPLL_RS05880 (DPPLL_11760) - 1254731..1256137 (-) 1407 WP_284153882.1 FAD-dependent protein -
  DPPLL_RS05885 (DPPLL_11770) recA 1256175..1257206 (-) 1032 WP_284153883.1 recombinase RecA Machinery gene
  DPPLL_RS05890 (DPPLL_11780) - 1257319..1258569 (-) 1251 WP_284153884.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  DPPLL_RS05895 (DPPLL_11790) mtaB 1258573..1259886 (-) 1314 WP_284153885.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB -
  DPPLL_RS05900 (DPPLL_11800) mnmA 1259883..1260941 (-) 1059 WP_284153886.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37451.57 Da        Isoelectric Point: 6.0701

>NTDB_id=92435 DPPLL_RS05885 WP_284153883.1 1256175..1257206(-) (recA) [Desulfofustis limnaeus strain PPLL]
MSNDSKNKQSSVENALSQIQRQFGKGSIMRLGSRETEEVPAVPTGSLSLDIALGVGGLPRGRVTEIYGPESSGKTTLALH
AIAEVQKRGGTAAFIDAEHALDTSYAQRLGVDIDNLLVSQPDFGEQALEIAEILIRSNGVDIIVIDSVAALVPRAEIDGN
VGDAHVGLQARLMSHAMRKFTGVLNRSRCILVFINQIRMKIGVMFGNPETTTGGNALKFYSSIRLDIRKVNQIKDGQEVI
GNRTKVKVVKNKVAPPFKNCEFDIIYGEGISREGDILDLAVEQEIVDKSGAWYSYQDERIGQGRENAKQFLVDHPEMCRD
IENKVRLGYGLTVNQEAPAEKTA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=92435 DPPLL_RS05885 WP_284153883.1 1256175..1257206(-) (recA) [Desulfofustis limnaeus strain PPLL]
ATGTCCAACGATAGCAAAAACAAGCAGAGCAGTGTCGAAAACGCCCTCAGTCAGATCCAGCGGCAGTTTGGCAAAGGATC
GATCATGCGGCTCGGATCACGGGAGACGGAAGAAGTGCCGGCCGTCCCCACCGGATCACTCAGCCTCGATATTGCTCTTG
GTGTCGGCGGGCTGCCGCGGGGCCGGGTCACCGAGATCTATGGTCCGGAATCAAGCGGCAAGACCACCCTGGCCCTGCAT
GCCATCGCTGAAGTGCAGAAACGGGGTGGAACCGCCGCCTTCATCGACGCTGAGCACGCCCTGGACACCAGCTATGCCCA
ACGCCTCGGGGTAGACATCGACAACCTGCTCGTGTCCCAACCCGATTTCGGCGAACAGGCCCTGGAGATCGCCGAGATCC
TGATCCGCTCCAACGGAGTGGACATCATCGTCATCGATTCGGTGGCGGCCCTGGTACCCCGCGCCGAGATCGACGGCAAC
GTCGGCGACGCCCATGTGGGGCTGCAGGCCCGACTGATGTCGCATGCCATGCGCAAGTTCACCGGGGTGCTCAACCGGAG
CCGCTGCATCCTCGTATTTATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACCCGGAGACCACCACCGGCG
GTAACGCCTTAAAATTCTATTCTTCCATACGGCTCGATATCCGCAAGGTGAACCAGATCAAAGACGGCCAGGAGGTGATC
GGCAACCGCACCAAGGTGAAGGTCGTCAAAAACAAGGTCGCCCCGCCGTTCAAAAATTGCGAGTTCGATATCATTTATGG
CGAGGGCATCTCCCGGGAGGGTGACATCCTCGATCTGGCGGTCGAACAGGAAATCGTCGACAAGAGCGGCGCCTGGTATT
CCTATCAGGACGAACGGATCGGCCAGGGCCGGGAAAACGCCAAACAATTCCTGGTGGACCACCCGGAGATGTGCCGGGAC
ATCGAAAACAAGGTACGACTCGGTTACGGCCTGACCGTCAACCAAGAGGCACCCGCCGAAAAGACCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

69.427

91.545

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

65.549

95.627

0.627
  recA Acinetobacter baylyi ADP1

65

93.294

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

63.692

94.752

0.603
  recA Helicobacter pylori strain NCTC11637

63.19

95.044

0.601
  recA Acinetobacter baumannii D1279779

64.174

93.586

0.601
  recA Streptococcus mitis SK321

60.651

98.542

0.598
  recA Streptococcus pneumoniae Rx1

60.472

98.834

0.598
  recA Streptococcus pneumoniae TIGR4

60.472

98.834

0.598
  recA Streptococcus pneumoniae R6

60.472

98.834

0.598
  recA Streptococcus pneumoniae D39

60.472

98.834

0.598
  recA Streptococcus mutans UA159

62.5

95.627

0.598
  recA Helicobacter pylori 26695

62.883

95.044

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.24

93.586

0.592
  recA Vibrio cholerae strain A1552

63.24

93.586

0.592
  recA Streptococcus mitis NCTC 12261

60.961

97.085

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.963

95.044

0.589
  recA Pseudomonas stutzeri DSM 10701

62.928

93.586

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.909

96.21

0.586
  recA Glaesserella parasuis strain SC1401

61.92

94.169

0.583
  recA Neisseria gonorrhoeae strain FA1090

61.61

94.169

0.58
  recA Neisseria gonorrhoeae MS11

61.61

94.169

0.58
  recA Neisseria gonorrhoeae MS11

61.61

94.169

0.58
  recA Streptococcus pyogenes NZ131

60.55

95.335

0.577
  recA Lactococcus lactis subsp. cremoris KW2

59.459

97.085

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

94.461

0.554

Multiple sequence alignment