Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VRB85_RS18070 Genome accession   NZ_CP142201
Coordinates   3773659..3774726 (-) Length   355 a.a.
NCBI ID   WP_338557684.1    Uniprot ID   -
Organism   Erwinia sp. E_sp_W01_6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3768659..3779726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB85_RS18055 (VRB85_18045) csrA 3769733..3769918 (-) 186 WP_004155916.1 carbon storage regulator CsrA -
  VRB85_RS18060 (VRB85_18050) alaS 3770164..3772791 (-) 2628 WP_338557680.1 alanine--tRNA ligase -
  VRB85_RS18065 (VRB85_18055) - 3772929..3773444 (-) 516 WP_338557682.1 regulatory protein RecX -
  VRB85_RS18070 (VRB85_18060) recA 3773659..3774726 (-) 1068 WP_338557684.1 recombinase RecA Machinery gene
  VRB85_RS18075 (VRB85_18065) pncC 3774829..3775317 (-) 489 WP_338557685.1 nicotinamide-nucleotide amidase -
  VRB85_RS18080 (VRB85_18070) tam 3775430..3776203 (-) 774 WP_338557686.1 trans-aconitate 2-methyltransferase -
  VRB85_RS18085 (VRB85_18075) mltB 3776281..3777348 (-) 1068 WP_338557688.1 lytic murein transglycosylase B -
  VRB85_RS18090 (VRB85_18080) fucP 3777491..3778732 (-) 1242 WP_338557691.1 L-fucose:H+ symporter permease -
  VRB85_RS18095 (VRB85_18085) - 3778839..3779168 (-) 330 Protein_3552 L-rhamnose mutarotase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37963.46 Da        Isoelectric Point: 5.0544

>NTDB_id=923120 VRB85_RS18070 WP_338557684.1 3773659..3774726(-) (recA) [Erwinia sp. E_sp_W01_6]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANSGNFLKENPAIANEI
EAKLRATLMSTGDSKPDFVATAEEIDEGSETSDKF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=923120 VRB85_RS18070 WP_338557684.1 3773659..3774726(-) (recA) [Erwinia sp. E_sp_W01_6]
ATGGCTATTGACGAAAACAAGCAAAAAGCACTGGCAGCAGCGCTGGGCCAGATTGAAAAGCAATTTGGTAAAGGTTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGACGTGGAGACCATCTCTACCGGTTCCCTGTCGCTGGATATCGCACTGGGTG
CGGGCGGCCTGCCGATGGGACGTATTGTTGAAATATATGGCCCGGAATCTTCAGGTAAAACCACGCTGACTCTGCAGGTG
ATTGCTTCAGCTCAGCGTAAAGGTAAAACCTGTGCGTTTATCGATGCTGAGCATGCGCTTGATCCTGTGTATGCCAAGAA
ACTTGGCGTGGACATCGACAACCTGCTTTGCTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGATGCGTTAG
CCCGTTCAGGCGCTGTAGACGTGATCATCGTGGATTCCGTGGCGGCACTGACGCCTAAAGCGGAAATCGAAGGTGAGATT
GGTGATTCTCATATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAAAACTCCAA
TACCCTGCTGATCTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCGGAAACCACTACCGGCGGTA
ACGCACTGAAATTCTACGCCTCCGTTCGTCTTGATATCCGCCGTATCGGTGCGATTAAAGAAGGTGACGAAGTGGTAGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCATTTAAGCAGGCCGAGTTCCAGATCATGTACGGTGA
AGGCATCAACATCTACGGTGAGCTGGTGGATCTGGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGACAAAATTGGTCAGGGTAAAGCGAACTCAGGTAACTTCCTGAAAGAGAACCCGGCAATTGCCAACGAAATT
GAAGCGAAACTGCGCGCCACGCTGATGAGCACCGGCGACAGCAAGCCTGATTTTGTAGCCACGGCAGAAGAAATTGACGA
AGGCAGCGAAACCAGCGATAAATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.756

92.394

0.783
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.756

92.394

0.783
  recA Pseudomonas stutzeri DSM 10701

75.38

92.676

0.699
  recA Acinetobacter baumannii D1279779

71.512

96.901

0.693
  recA Acinetobacter baylyi ADP1

71.014

97.183

0.69
  recA Glaesserella parasuis strain SC1401

72.424

92.958

0.673
  recA Ralstonia pseudosolanacearum GMI1000

68.485

92.958

0.637
  recA Neisseria gonorrhoeae MS11

69.538

91.549

0.637
  recA Neisseria gonorrhoeae MS11

69.538

91.549

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.538

91.549

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.172

98.31

0.592
  recA Helicobacter pylori strain NCTC11637

61.128

94.93

0.58
  recA Streptococcus mitis NCTC 12261

58.857

98.592

0.58
  recA Streptococcus mitis SK321

58.857

98.592

0.58
  recA Helicobacter pylori 26695

60.831

94.93

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

58.721

96.901

0.569
  recA Streptococcus pneumoniae TIGR4

61.963

91.831

0.569
  recA Streptococcus pneumoniae Rx1

61.963

91.831

0.569
  recA Streptococcus pneumoniae D39

61.963

91.831

0.569
  recA Streptococcus pneumoniae R6

61.963

91.831

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

90.141

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.18

94.085

0.566
  recA Streptococcus mutans UA159

61.846

91.549

0.566
  recA Streptococcus pyogenes NZ131

61.538

91.549

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.42

91.268

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.385

91.549

0.544