Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VSF34_RS08610 Genome accession   NZ_CP142146
Coordinates   1733278..1734327 (-) Length   349 a.a.
NCBI ID   WP_326716908.1    Uniprot ID   -
Organism   Vagococcus jeotgali strain B2T-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1728278..1739327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSF34_RS08590 - 1728496..1729221 (-) 726 WP_326716904.1 ThuA domain-containing protein -
  VSF34_RS08595 - 1729218..1730309 (-) 1092 WP_326716905.1 Gfo/Idh/MocA family oxidoreductase -
  VSF34_RS08600 - 1730384..1731259 (-) 876 WP_326716906.1 AraC family transcriptional regulator -
  VSF34_RS08605 rny 1731378..1732931 (-) 1554 WP_370659253.1 ribonuclease Y -
  VSF34_RS08610 recA 1733278..1734327 (-) 1050 WP_326716908.1 recombinase RecA Machinery gene
  VSF34_RS08615 - 1734418..1735632 (-) 1215 WP_326716909.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  VSF34_RS08620 - 1735895..1736530 (+) 636 WP_326716910.1 redox-sensing transcriptional repressor Rex -
  VSF34_RS08625 - 1736612..1737109 (-) 498 WP_326716911.1 CPBP family intramembrane glutamic endopeptidase -
  VSF34_RS08630 groES 1737393..1737677 (+) 285 WP_326716912.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37733.86 Da        Isoelectric Point: 4.5870

>NTDB_id=921989 VSF34_RS08610 WP_326716908.1 1733278..1734327(-) (recA) [Vagococcus jeotgali strain B2T-5]
MSDNRQAALDAALKKIEKDFGKGSVMKLGEKVDTQISTISSGSLALDSALGVGGYPRGRIIEIYGPESSGKTTVALHAIA
AVQKEGGTAAFIDAEHALDPKYAQALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKTGTDIIGNR
TKIKVVKNKVAPPFKVAEVDIMYGEGISQEGELLDMASEEDIVNKSGAWYSYQEERIGQGRENAKKYLADHPDMMEEIYN
KVRIAYNIDDVEVVEEEVTEDIALDLDKE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=921989 VSF34_RS08610 WP_326716908.1 1733278..1734327(-) (recA) [Vagococcus jeotgali strain B2T-5]
ATGTCAGATAATCGCCAAGCAGCCTTAGATGCTGCTTTAAAGAAAATAGAAAAAGATTTTGGTAAAGGTTCTGTAATGAA
ATTAGGAGAAAAAGTTGACACGCAAATTTCAACGATTTCTAGTGGCTCACTTGCTCTTGACTCAGCATTAGGTGTAGGTG
GCTACCCTCGTGGAAGAATCATTGAAATTTATGGGCCTGAGAGTTCAGGTAAGACAACAGTAGCTCTACATGCTATTGCA
GCTGTACAAAAAGAAGGTGGAACAGCCGCATTTATTGATGCAGAGCATGCCTTGGATCCAAAATATGCTCAAGCTTTAGG
AGTTAATATTGATGAGTTATTACTATCACAACCAGATACAGGCGAGCAAGGATTGAATATTGCTGAGGCTCTAGTTTCTA
GTGGTGCGATTGACATTGTAGTAGTCGATTCTGTGGCAGCCTTAGTACCAAGAGCTGAGATAGATGGCGAGATGGGGGAT
GCTCATGTTGGGCTTCAAGCTCGTTTGATGTCACAAGCATTAAGAAAATTATCTGGAACGATTAATAAAACTAAAACAAT
AGCTATCTTCATCAACCAAATTAGGGAAAAAGTTGGGGTTATGTTTGGTAATCCAGAGGTAACACCTGGTGGCCGTGCTT
TGAAATTTTATGCAACAGTTCGTTTAGAAGTACGCCGTGCAGAACAATTAAAAACGGGAACAGATATTATTGGGAATCGT
ACTAAGATAAAAGTAGTGAAAAATAAAGTAGCGCCACCATTTAAAGTAGCTGAAGTTGACATTATGTACGGAGAAGGCAT
TTCTCAAGAAGGAGAACTACTTGATATGGCATCTGAAGAAGATATTGTCAATAAGAGTGGTGCTTGGTATTCATACCAAG
AAGAGCGCATCGGTCAAGGAAGAGAAAATGCTAAGAAATATTTAGCAGATCACCCTGACATGATGGAGGAAATCTATAAT
AAAGTACGTATTGCTTATAATATTGATGATGTAGAAGTAGTTGAGGAAGAAGTAACAGAAGACATAGCTCTAGATTTAGA
TAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.891

97.135

0.805
  recA Bacillus subtilis subsp. subtilis str. 168

79.042

95.702

0.756
  recA Streptococcus pyogenes NZ131

70.588

100

0.722
  recA Streptococcus mitis SK321

68.595

100

0.713
  recA Streptococcus mitis NCTC 12261

69.081

100

0.711
  recA Streptococcus pneumoniae D39

71.848

97.708

0.702
  recA Streptococcus pneumoniae Rx1

71.848

97.708

0.702
  recA Streptococcus pneumoniae R6

71.848

97.708

0.702
  recA Streptococcus pneumoniae TIGR4

71.848

97.708

0.702
  recA Streptococcus mutans UA159

68.839

100

0.696
  recA Lactococcus lactis subsp. cremoris KW2

71.557

95.702

0.685
  recA Neisseria gonorrhoeae strain FA1090

61.404

97.994

0.602
  recA Neisseria gonorrhoeae MS11

61.404

97.994

0.602
  recA Neisseria gonorrhoeae MS11

61.404

97.994

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

94.269

0.593
  recA Ralstonia pseudosolanacearum GMI1000

62.195

93.983

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.237

96.562

0.582
  recA Vibrio cholerae strain A1552

60.237

96.562

0.582
  recA Acinetobacter baylyi ADP1

62.539

92.55

0.579
  recA Acinetobacter baumannii D1279779

62.539

92.55

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

92.264

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.212

94.556

0.579
  recA Pseudomonas stutzeri DSM 10701

58.601

98.281

0.576
  recA Glaesserella parasuis strain SC1401

60.423

94.842

0.573
  recA Helicobacter pylori 26695

61.42

92.837

0.57
  recA Helicobacter pylori strain NCTC11637

61.42

92.837

0.57