Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VPX56_RS17550 Genome accession   NZ_CP142124
Coordinates   3696046..3697104 (-) Length   352 a.a.
NCBI ID   WP_131633768.1    Uniprot ID   -
Organism   Enterobacter wuhouensis strain AV1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3691046..3702104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPX56_RS17535 (VPX56_17535) csrA 3692291..3692476 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  VPX56_RS17540 (VPX56_17540) alaS 3692718..3695345 (-) 2628 WP_131633770.1 alanine--tRNA ligase -
  VPX56_RS17545 (VPX56_17545) recX 3695477..3695977 (-) 501 WP_131633769.1 recombination regulator RecX -
  VPX56_RS17550 (VPX56_17550) recA 3696046..3697104 (-) 1059 WP_131633768.1 recombinase RecA Machinery gene
  VPX56_RS17555 (VPX56_17555) pncC 3697194..3697691 (-) 498 WP_131633767.1 nicotinamide-nucleotide amidase -
  VPX56_RS17560 (VPX56_17560) - 3697822..3698700 (-) 879 WP_326472099.1 metal ABC transporter substrate-binding protein -
  VPX56_RS17565 (VPX56_17565) - 3698715..3699575 (-) 861 WP_326467982.1 metal ABC transporter permease -
  VPX56_RS17570 (VPX56_17570) - 3699572..3700225 (-) 654 WP_131633765.1 metal ABC transporter ATP-binding protein -
  VPX56_RS17575 (VPX56_17575) mltB 3700597..3701697 (-) 1101 WP_263610278.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37826.20 Da        Isoelectric Point: 4.8057

>NTDB_id=921873 VPX56_RS17550 WP_131633768.1 3696046..3697104(-) (recA) [Enterobacter wuhouensis strain AV1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKDNPAAAKEI
EKKVRELLLNNQDSKPDFVADAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=921873 VPX56_RS17550 WP_131633768.1 3696046..3697104(-) (recA) [Enterobacter wuhouensis strain AV1]
ATGGCTATCGACGAGAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACTATCTCCACCGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCAATGGGCCGTATCGTAGAAATCTACGGACCGGAATCCTCAGGTAAAACGACCCTGACCCTGCAGGTG
GTTGCAGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCTGTCTATGCTCGTAA
ACTGGGCGTTGATATCGACAACCTGCTGTGTTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTAATCATCGTCGACTCCGTTGCGGCGTTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCACTGAAATTCTACGCGTCTGTTCGTCTGGATATTCGTCGTATCGGCGCAGTGAAAGACGGCGAGAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGCATTAACTTCTACGGCGAGCTGGTCGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGATAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGATAACCCGGCTGCAGCGAAAGAGATT
GAGAAGAAGGTGCGTGAGCTTCTGCTGAACAACCAGGACTCCAAACCTGATTTCGTGGCTGATGCTGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.633

97.443

0.795
  recA Vibrio cholerae strain A1552

81.633

97.443

0.795
  recA Pseudomonas stutzeri DSM 10701

72.543

98.295

0.713
  recA Glaesserella parasuis strain SC1401

68.946

99.716

0.688
  recA Acinetobacter baumannii D1279779

73.7

92.898

0.685
  recA Acinetobacter baylyi ADP1

73.171

93.182

0.682
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.418

88.352

0.622
  recA Helicobacter pylori strain NCTC11637

60.831

95.739

0.582
  recA Helicobacter pylori 26695

60.534

95.739

0.58
  recA Streptococcus mitis NCTC 12261

62.848

91.761

0.577
  recA Streptococcus mitis SK321

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

92.045

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Lactococcus lactis subsp. cremoris KW2

61.3

91.761

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

91.193

0.554