Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VQ573_RS04610 Genome accession   NZ_CP142095
Coordinates   1039805..1040872 (+) Length   355 a.a.
NCBI ID   WP_014656658.1    Uniprot ID   A0A140NIV2
Organism   Providencia stuartii strain 41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034805..1045872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ573_RS04590 (VQ573_04590) aroL 1035224..1035721 (+) 498 WP_004923298.1 shikimate kinase AroL -
  VQ573_RS04595 (VQ573_04595) aas 1035833..1037977 (+) 2145 WP_014656660.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  VQ573_RS04600 (VQ573_04600) lplT 1037982..1039172 (+) 1191 WP_004923175.1 lysophospholipid transporter LplT -
  VQ573_RS04605 (VQ573_04605) pncC 1039195..1039698 (+) 504 WP_014656659.1 nicotinamide-nucleotide amidase -
  VQ573_RS04610 (VQ573_04610) recA 1039805..1040872 (+) 1068 WP_014656658.1 recombinase RecA Machinery gene
  VQ573_RS04615 (VQ573_04615) alaS 1041324..1043954 (+) 2631 WP_014656657.1 alanine--tRNA ligase -
  VQ573_RS04620 (VQ573_04620) csrA 1044182..1044367 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38288.66 Da        Isoelectric Point: 4.8985

>NTDB_id=921488 VQ573_RS04610 WP_014656658.1 1039805..1040872(+) (recA) [Providencia stuartii strain 41]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANATTYLKEHREIAEEL
DKKLREMLLTHTGEFSSAAADYISETDEDETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=921488 VQ573_RS04610 WP_014656658.1 1039805..1040872(+) (recA) [Providencia stuartii strain 41]
ATGGCTATCGATGAAAACAAACAAAAGGCATTAGCTGCAGCGTTAGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCTAT
CATGCGTCTTGGTGAAGACCGCTCAATGGACGTAGAAACTATTTCAACAGGCTCTTTATCTCTTGATGTGGCTTTAGGTG
CAGGTGGTTTGCCATTAGGGCGTATTGTCGAAATTTATGGTCCTGAATCTTCTGGTAAAACAACACTCACGTTGCAAGTT
ATTGCAGCAGCACAACGTAGCGGAAAAACCTGTGCATTTATCGACGCTGAACATGCGCTAGATCCAATCTATGCGAAAAA
ACTGGGTGTTGATATCGATAACCTTCTATGTTCTCAACCTGATACTGGTGAGCAAGCATTAGAGATTTGTGATGCACTGA
CGCGTTCAGGCGCTGTTGATGTCATTATCGTTGACTCCGTAGCCGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATC
GGTGACTCACACATGGGCTTAGCGGCTCGTATGATGAGCCAAGCGATGCGTAAATTAGCGGGTAACTTAAAGAACTCGAA
TACACTTTTAATCTTCATTAACCAAATCCGTATGAAGATCGGCGTTATGTTTGGTAACCCTGAAACCACTACAGGTGGTA
ACGCTCTGAAATTCTACGCTTCTGTTCGTTTAGATATTCGCCGTATCGGTGCTGTCAAAAATGGTGAAGAAATTGTAGGT
AGCGAAACACGCGTTAAAGTTGTTAAAAACAAAGTTGCAGCGCCATTTAAACAGGCTGAATTCCAAATCCTTTATGGTGA
AGGCATTAACACCTATGGTGAATTGATCGACTTAGGTGTTAAACATAAGTTGATTGAAAAAGCCGGTGCTTGGTATAGCT
ATAACGGTGATAAAATCGGTCAAGGTAAAGCAAACGCGACAACGTATCTGAAAGAGCATCGGGAAATTGCAGAAGAACTC
GATAAAAAATTGCGTGAAATGCTTTTAACGCATACTGGTGAGTTTAGCAGCGCAGCGGCTGACTATATCAGTGAAACTGA
TGAAGATGAGACACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A140NIV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.726

100

0.814
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.726

100

0.814
  recA Pseudomonas stutzeri DSM 10701

71.965

97.465

0.701
  recA Acinetobacter baylyi ADP1

69.602

99.155

0.69
  recA Acinetobacter baumannii D1279779

74.085

92.394

0.685
  recA Glaesserella parasuis strain SC1401

68.946

98.873

0.682
  recA Neisseria gonorrhoeae MS11

64.986

100

0.654
  recA Neisseria gonorrhoeae MS11

64.986

100

0.654
  recA Neisseria gonorrhoeae strain FA1090

64.986

100

0.654
  recA Ralstonia pseudosolanacearum GMI1000

67.47

93.521

0.631
  recA Streptococcus pneumoniae TIGR4

59.659

99.155

0.592
  recA Streptococcus pneumoniae Rx1

59.659

99.155

0.592
  recA Streptococcus pneumoniae D39

59.659

99.155

0.592
  recA Streptococcus pneumoniae R6

59.659

99.155

0.592
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Helicobacter pylori 26695

62.997

92.113

0.58
  recA Streptococcus mitis NCTC 12261

58.405

98.873

0.577
  recA Streptococcus mitis SK321

58.671

97.465

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

92.113

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.549

0.561
  recA Streptococcus mutans UA159

61.231

91.549

0.561
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

90.423

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.521

0.558
  recA Streptococcus pyogenes NZ131

60.923

91.549

0.558
  recA Lactococcus lactis subsp. cremoris KW2

61.3

90.986

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.502

90.423

0.538